Evidence map›Paper›PMID 27914169›Full record

ArticleFEBS letters2017

Crystal structure of cGMP-dependent protein kinase Iβ cyclic nucleotide-binding-B domain : Rp-cGMPS complex reveals an apo-like, inactive conformation.

James C Campbell, Bryan VanSchouwen, Robin Lorenz, Banumathi Sankaran, Friedrich W Herberg, Giuseppe Melacini, Choel Kim

Open access · greenAbstract readLetter
In one paragraph

Article in FEBS letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Cyclic nucleotide selectivity of protein kinase G isozymes.Protein science : a publication of the Protein Society · 2021
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

James C CampbellStructural and Computational Biology and Molecular Biophysics Program, Baylor College of Medicine, Houston, TX, USA.
Bryan VanSchouwenDepartment of Chemistry and Chemical Biology, McMaster University, Hamilton, Canada.
Robin LorenzDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Banumathi SankaranBerkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, CA, USA.
Friedrich W HerbergDepartment of Biochemistry, University of Kassel, Kassel, Hesse, Germany.
Giuseppe MelaciniDepartment of Chemistry and Chemical Biology, McMaster University, Hamilton, Canada.
Choel KimStructural and Computational Biology and Molecular Biophysics Program, Baylor College of Medicine, Houston, TX, USA.
Baylor College of Medicine · USMcMaster University · CAUniversity of Kassel · DELawrence Berkeley National Laboratory · US

Funding

Initiative for Maximizing Student Development (IMSD) ProgramR25GM056929 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PEREIRA, FRED A · 1998 to 2023
$12.4M
Targeting mechanisms of cGMP dependent protein kinases by peptide arrays and crysR01GM090161 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2010 to 2018
$2.9M
Training in Pharmacological SciencesT32GM089657 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HANCOCK, JOHN F · 2010 to 2014
$728k
NIGMS NIH HHS R01 GM090161NIGMS NIH HHS R25 GM056929NIGMS NIH HHS T32 GM089657
6 · The paper itself

Abstract

The R-diastereomer of phosphorothioate analogs of cGMP, Rp-cGMPS, is one of few known inhibitors of cGMP-dependent protein kinase I (PKG I); however, its mechanism of inhibition is currently not fully understood. Here, we determined the crystal structure of the PKG Iβ cyclic nucleotide-binding domain (PKG Iβ CNB-B), considered a 'gatekeeper' for cGMP activation, bound to Rp-cGMPS at 1.3 Å. Our structural and NMR data show that PKG Iβ CNB-B bound to Rp-cGMPS displays an apo-like structure with its helical domain in an open conformation. Comparison with the cAMP-dependent protein kinase regulatory subunit (PKA RIα) showed that this conformation resembles the catalytic subunit-bound inhibited state of PKA RIα more closely than the apo or Rp-cAMPS-bound conformations. These results suggest that Rp-cGMPS inhibits PKG I by stabilizing the inactive conformation of CNB-B.

Indexed as

Amino Acid SequenceApoenzymesCrystallography, X-RayCyclic GMPCyclic GMP-Dependent Protein Kinase Type IEnzyme StabilityKineticsMagnetic Resonance SpectroscopyProtein ConformationProtein DomainsStereoisomerismThionucleotidesApoenzymesCyclic GMPCyclic GMP-Dependent Protein Kinase Type IThionucleotidescGMP-dependent protein kinasekinase inhibitionNO-cGMP signalingsecond messengers

Identifiers

PMID27914169
PMCPMC5407887
OpenAlexW2559258571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.