Evidence map›Paper›PMID 27913727›Full record

ArticleNucleic acids research2017

Regulated complex assembly safeguards the fidelity of Sleeping Beauty transposition.

Yongming Wang, Diana Pryputniewicz-Dobrinska, Enikö Éva Nagy, Christopher D Kaufman, Manvendra Singh, Steve Yant, Jichang Wang, Anna Dalda, Mark A Kay, Zoltán Ivics and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  12. Precise Gene Knock-In Tools with Minimized Risk of DSBs: A Trend for Gene Manipulation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yongming WangMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Diana Pryputniewicz-DobrinskaMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Enikö Éva NagyMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Christopher D KaufmanMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Manvendra SinghMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Steve YantDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA 94305-5164, USA.
Jichang WangMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Anna DaldaMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany.
Mark A KayDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA 94305-5164, USA.
Zoltán IvicsDivision of Medical Biotechnology, Paul-Ehrlich-Institute, Langen 63225, Germany zoltan.ivics@pei.de.
Zsuzsanna IzsvákMax-Delbrück-Center for Molecular Medicine in the Helmholtz Society, Berlin 13125, Germany zizsvak@mdc-berlin.de.
Max Delbrück Center · DEStanford University · USPaul Ehrlich Institut · DE

Funding

HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
European Research Council 294742NHLBI NIH HHS R01 HL064274
6 · The paper itself

Abstract

The functional relevance of the inverted repeat structure (IR/DR) in a subgroup of the Tc1/mariner superfamily of transposons has been enigmatic. In contrast to mariner transposition, where a topological filter suppresses single-ended reactions, the IR/DR orchestrates a regulatory mechanism to enforce synapsis of the transposon ends before cleavage by the transposase occurs. This ordered assembly process shepherds primary transposase binding to the inner 12DRs (where cleavage does not occur), followed by capture of the 12DR of the other transposon end. This extra layer of regulation suppresses aberrant, potentially genotoxic recombination activities, and the mobilization of internally deleted copies in the IR/DR subgroup, including Sleeping Beauty (SB). In contrast, internally deleted sequences (MITEs) are preferred substrates of mariner transposition, and this process is associated with the emergence of Hsmar1-derived miRNA genes in the human genome. Translating IR/DR regulation to in vitro evolution yielded an SB transposon version with optimized substrate recognition (pT4). The ends of SB transposons excised by a K248A excision

Indexed as

DNA End-Joining RepairDNA Transposable ElementsRecombinational DNA RepairAnimalsDNA-Binding ProteinsHeLa CellsHumansInverted Repeat SequencesMicroRNAsRNA-Binding ProteinsTransposasesZebrafishZebrafish ProteinsDNA-Binding ProteinsDNA Transposable Elementsmariner transposasesMicroRNAsRNA-Binding Proteinssleeping beauty transposase, humanTdrd1 protein, zebrafishTransposasesZebrafish Proteins

Identifiers

PMID27913727
PMCPMC5224488
OpenAlexW2560274636

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.