Evidence map›Paper›PMID 27913292›Full record

ReviewBiochimica et biophysica acta. Molecular and cell biology of lipids2017

Structural basis for catalysis at the membrane-water interface.

Meagan Belcher Dufrisne, Vasileios I Petrou, Oliver B Clarke, Filippo Mancia

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta. Molecular and cell biology of lipids, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Membrane properties that shape the evolution of membrane enzymes.Current opinion in structural biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Meagan Belcher DufrisneDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA.
Vasileios I PetrouDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA.
Oliver B ClarkeDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Filippo ManciaDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address: fm123@cumc.columbia.edu.
Columbia University · US

Funding

Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI MCDERMOTT, ANN E · 2005 to 2009
$16.8M
Structural Genomics on Membrane ProteinsU54GM095315 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI ROST, BURKHARD · 2010 to 2014
$15.2M
Training (303-338)P41GM116799 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI HENDRICKSON, WAYNE A. · 2016 to 2020
$7.1M
Lipid biosynthesis and modification by integral-membrane enzymesR01GM111980 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANCIA, FILIPPO · 2015 to 2018
$2.2M
Structural basis of phosphoinositide biosynthesis in Mycobacterium tuberculosisR21AI119672 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANCIA, FILIPPO · 2015 to 2016
$440k
NIAID NIH HHS R21 AI119672NIGMS NIH HHS P41 GM116799NIGMS NIH HHS R01 GM111980NIGMS NIH HHS U54 GM075026NIGMS NIH HHS U54 GM095315
6 · The paper itself

Abstract

The membrane-water interface forms a uniquely heterogeneous and geometrically constrained environment for enzymatic catalysis. Integral membrane enzymes sample three environments - the uniformly hydrophobic interior of the membrane, the aqueous extramembrane region, and the fuzzy, amphipathic interfacial region formed by the tightly packed headgroups of the components of the lipid bilayer. Depending on the nature of the substrates and the location of the site of chemical modification, catalysis may occur in each of these environments. The availability of structural information for alpha-helical enzyme families from each of these classes, as well as several beta-barrel enzymes from the bacterial outer membrane, has allowed us to review here the different ways in which each enzyme fold has adapted to the nature of the substrates, products, and the unique environment of the membrane. Our focus here is on enzymes that process lipidic substrates. This article is part of a Special Issue entitled: Bacterial Lipids edited by Russell E. Bishop.

Indexed as

BacteriaBacterial ProteinsCatalysisCatalytic DomainCell MembraneHydrophobic and Hydrophilic InteractionsMembrane LipidsModels, MolecularProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein FoldingStructure-Activity RelationshipSubstrate SpecificityWaterBacterial ProteinsMembrane LipidsWater

Identifiers

PMID27913292
PMCPMC5449265
OpenAlexW2558604697

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.