Evidence map›Paper›PMID 27911835›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Two crystal structures reveal design for repurposing the C-Ala domain of human AlaRS.

Litao Sun, Youngzee Song, David Blocquel, Xiang-Lei Yang, Paul Schimmel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  12. CMT2N-causing aminoacylation domain mutants enable Nrp1 interaction with AlaRS.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  16. Distinct ways of G:U recognition by conserved tRNA binding motifs.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Litao SunThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037.
Youngzee SongThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037.
David BlocquelThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037.
Xiang-Lei YangThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037.
Paul SchimmelThe Scripps Laboratories for tRNA Synthetase Research, The Scripps Research Institute, La Jolla, CA 92037; schimmel@scripps.edu.
Scripps Research Institute · USScripps Laboratories (United States) · US

Funding

Components of Translation in Signal TransductionR01CA092577 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHIMMEL, PAUL R · 2001 to 2016
$4.5M
Elucidating pathological mechanism of DI-CMTCR01NS085092 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI YANG, XIANG-LEI · 2013 to 2017
$2.2M
NCI NIH HHS R01 CA092577NINDS NIH HHS R01 NS085092
6 · The paper itself

Abstract

The 20 aminoacyl tRNA synthetases (aaRSs) couple each amino acid to their cognate tRNAs. During evolution, 19 aaRSs expanded by acquiring novel noncatalytic appended domains, which are absent from bacteria and many lower eukaryotes but confer extracellular and nuclear functions in higher organisms. AlaRS is the single exception, with an appended C-terminal domain (C-Ala) that is conserved from prokaryotes to humans but with a wide sequence divergence. In human cells, C-Ala is also a splice variant of AlaRS. Crystal structures of two forms of human C-Ala, and small-angle X-ray scattering of AlaRS, showed that the large sequence divergence of human C-Ala reshaped C-Ala in a way that changed the global architecture of AlaRS. This reshaping removes the role of C-Ala in prokaryotes for docking tRNA and instead repurposes it to form a dimer interface presenting a DNA-binding groove. This groove cannot form with the bacterial ortholog. Direct DNA binding by human C-Ala, but not by bacterial C-Ala, was demonstrated. Thus, instead of acquiring a novel appended domain like other human aaRSs, which engendered novel functions, a new AlaRS architecture was created by diversifying a preexisting appended domain.

Indexed as

Alanine-tRNA LigaseAlternative SplicingAmino Acid SequenceAnimalsArchaeal ProteinsArchaeoglobus fulgidusBinding SitesConserved SequenceCrystallography, X-RayDNAEvolution, MolecularHumansKineticsModels, MolecularProtein DomainsProtein MultimerizationAlanine-tRNA LigaseArchaeal ProteinsDNAappended domainDNA bindingevolutionsplice variantstructural plasticity

Identifiers

PMID27911835
PMCPMC5167178
OpenAlexW2557567892

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.