Evidence map›Paper›PMID 27911781›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase.

Ryan P McAndrew, Noppadon Sathitsuksanoh, Michael M Mbughuni, Richard A Heins, Jose H Pereira, Anthe George, Kenneth L Sale, Brian G Fox, Blake A Simmons, Paul D Adams

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 69 citations in OpenAlex.

  1. Food & function · 2026
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  11. Nature stays natural: two novel chemo-enzymatic one-pot cascades for the synthesis of fragrance and flavor aldehydes.Green chemistry : an international journal and green chemistry resource : GC · 2024
    Article
  12. Article
  13. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Structural and mechanistic aspects of carotenoid cleavage dioxygenases (CCDs).Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  19. Evolutionary aspects and enzymology of metazoan carotenoid cleavage oxygenases.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  20. Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Ryan P McAndrewJoint BioEnergy Institute, Emeryville, CA 94608; rpmcandrew@lbl.gov PDAdams@lbl.gov.
Noppadon SathitsuksanohJoint BioEnergy Institute, Emeryville, CA 94608.
Michael M MbughuniDepartment of Biochemistry, College of Agricultural and Life Sciences, University of Wisconsin, Madison, WI 53706.
Richard A HeinsJoint BioEnergy Institute, Emeryville, CA 94608.
Jose H PereiraJoint BioEnergy Institute, Emeryville, CA 94608.
Anthe GeorgeJoint BioEnergy Institute, Emeryville, CA 94608.
Kenneth L SaleJoint BioEnergy Institute, Emeryville, CA 94608.
Brian G FoxDepartment of Biochemistry, College of Agricultural and Life Sciences, University of Wisconsin, Madison, WI 53706.
Blake A SimmonsJoint BioEnergy Institute, Emeryville, CA 94608.
Paul D AdamsJoint BioEnergy Institute, Emeryville, CA 94608; rpmcandrew@lbl.gov PDAdams@lbl.gov.
Lawrence Berkeley National Laboratory · USGreat Lakes Bioenergy Research Center · USJoint BioEnergy Institute · USSandia National Laboratories California · USUniversity of California, Berkeley · USUniversity of Louisville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stilbenes are diphenyl ethene compounds produced naturally in a wide variety of plant species and some bacteria. Stilbenes are also derived from lignin during kraft pulping. Stilbene cleavage oxygenases (SCOs) cleave the central double bond of stilbenes, forming two phenolic aldehydes. Here, we report the structure of an SCO. The X-ray structure of NOV1 from Novosphingobium aromaticivorans was determined in complex with its substrate resveratrol (1.89 Å), its product vanillin (1.75 Å), and without any bound ligand (1.61 Å). The enzyme is a seven-bladed β-propeller with an iron cofactor coordinated by four histidines. In all three structures, dioxygen is observed bound to the iron in a side-on fashion. These structures, along with EPR analysis, allow us to propose a mechanism in which a ferric-superoxide reacts with substrate activated by deprotonation of a phenol group at position 4 of the substrate, which allows movement of electron density toward the central double bond and thus facilitates reaction with the ferric superoxide electrophile. Correspondingly, NOV1 cleaves a wide range of other stilbene-like compounds with a 4'-OH group, offering potential in processing some solubilized fragments of lignin into monomer aromatic compounds.

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayDioxygenasesElectron Spin Resonance SpectroscopyModels, MolecularRecombinant ProteinsResveratrolSphingomonadaceaeStilbenesSubstrate SpecificityBacterial ProteinsDioxygenasesRecombinant ProteinsResveratrolStilbenescarotenoiddioxygenasestilbenestructure

Identifiers

PMID27911781
PMCPMC5167157
OpenAlexW2557706956

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.