Evidence map›Paper›PMID 27911777›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean.

Rene M Boiteau, Daniel R Mende, Nicholas J Hawco, Matthew R McIlvin, Jessica N Fitzsimmons, Mak A Saito, Peter N Sedwick, Edward F DeLong, Daniel J Repeta

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
20.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 222 citations in OpenAlex.

  1. Article
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  6. Bacterial iron acquisition byProceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Article
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  13. Review
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  16. Iron limitation triggers roseoceramide biosynthesis and membrane remodeling in marine roseobacter.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Probiotic paradox: bacillibactin fromISME communications · 2025
    Article
  19. Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Rene M BoiteauDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543.ORCID 0000-0002-4127-4417
Daniel R MendeCenter for Microbial Oceanography Research and Education, University of Hawaii at Manoa, Honolulu, HI 96822.
Nicholas J HawcoDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543.
Matthew R McIlvinDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543.
Jessica N FitzsimmonsDepartment of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139.
Mak A SaitoDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543.
Peter N SedwickDepartment of Ocean, Earth and Atmospheric Sciences, Old Dominion University, Norfolk, VA 23529.
Edward F DeLongCenter for Microbial Oceanography Research and Education, University of Hawaii at Manoa, Honolulu, HI 96822.
Daniel J RepetaDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543; drepeta@whoi.edu.
Massachusetts Institute of Technology · USWoods Hole Oceanographic Institution · USUniversity of Hawaiʻi at Mānoa · USOld Dominion University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nearly all iron dissolved in the ocean is complexed by strong organic ligands of unknown composition. The effect of ligand composition on microbial iron acquisition is poorly understood, but amendment experiments using model ligands show they can facilitate or impede iron uptake depending on their identity. Here we show that siderophores, organic compounds synthesized by microbes to facilitate iron uptake, are a dynamic component of the marine ligand pool in the eastern tropical Pacific Ocean. Siderophore concentrations in iron-deficient waters averaged 9 pM, up to fivefold higher than in iron-rich coastal and nutrient-depleted oligotrophic waters, and were dominated by amphibactins, amphiphilic siderophores with cell membrane affinity. Phylogenetic analysis of amphibactin biosynthetic genes suggests that the ability to produce amphibactins has transferred horizontally across multiple Gammaproteobacteria, potentially driven by pressures to compete for iron. In coastal and oligotrophic regions of the eastern Pacific Ocean, amphibactins were replaced with lower concentrations (1-2 pM) of hydrophilic ferrioxamine siderophores. Our results suggest that organic ligand composition changes across the surface ocean in response to environmental pressures. Hydrophilic siderophores are predominantly found across regions of the ocean where iron is not expected to be the limiting nutrient for the microbial community at large. However, in regions with intense competition for iron, some microbes optimize iron acquisition by producing siderophores that minimize diffusive losses to the environment. These siderophores affect iron bioavailability and thus may be an important component of the marine iron cycle.

Indexed as

Adaptation, PhysiologicalBiological AvailabilityGammaproteobacteriaGenes, BacterialIronLigandsPacific OceanPhylogenySeawaterSiderophoresWater MicrobiologyIronLigandsSiderophoresGEOTRACEShigh nutrient low chlorophylliron ligandsmarine microbessiderophores

Identifiers

PMID27911777
PMCPMC5167167
OpenAlexW2557907553

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.