Evidence map›Paper›PMID 27911377›Full record

ArticleJournal of visualized experiments : JoVE2016

Hybrid-Cut: An Improved Sectioning Method for Recalcitrant Plant Tissue Samples.

Tien-Kuan Chen, Hui-Ting Yang, Su-Chiung Fang, Yi-Chen Lien, Ting-Ting Yang, Swee-Suak Ko

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  7. International journal of molecular sciences · 2023
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  12. Frontiers in plant science · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tien-Kuan ChenAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica.
Hui-Ting YangAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica.
Su-Chiung FangAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica.
Yi-Chen LienAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica.
Ting-Ting YangAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica.
Swee-Suak KoAcademia Sinica Biotechnology Center in Southern Taiwan; Agricultural Biotechnology Research Center, Academia Sinica; sweesuak@gate.sinica.edu.tw.
Agricultural Biotechnology Research Center, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maintaining plant section integrity is essential for studying detailed anatomical structures at the cellular, tissue, or even organ level. However, some plant cells have rigid cell walls, tough fibers and crystals (calcium oxalate, silica, etc.), and high water content that often disrupt tissue integrity during plant tissue sectioning. This study establishes a simple Hybrid-Cut tissue sectioning method. This protocol modifies a paraffin-based sectioning technique and improves the integrity of tissue sections from different plants. Plant tissues were embedded in paraffin before sectioning in a cryostat at -16 °C. Sectioning under low temperature hardened the paraffin blocks, reduced tearing and scratching, and improved tissue integrity significantly. This protocol was successfully applied to calcium oxalate-rich Phalaenopsis orchid tissues as well as recalcitrant tissues such as reproductive organs and leaves of rice, maize, and wheat. In addition, the high quality of tissue sections from Hybrid-Cut could be used in combination with in situ hybridization (ISH) to provide spatial expression patterns of genes of interest. In conclusion, this protocol is particularly useful for recalcitrant plant tissue containing high crystal or silica content. Good quality tissue sections enable morphological and other biological studies.

Indexed as

PlantsSpecimen HandlingIn Situ Hybridization

Identifiers

PMID27911377
PMCPMC5226275
OpenAlexW2556674005

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.