Evidence map›Paper›PMID 27911186›Full record

ReviewRNA biology2017

RNA decay, evolution, and the testis.

Samantha H Jones, Miles Wilkinson

Open access · bronzeAbstract readReview
In one paragraph

Review in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Tex13a Optimizes Sperm MotilityFrontiers in cell and developmental biology · 2021
    Article
  7. Review
  8. ALKBH5-dependent m6A demethylation controls splicing and stability of long 3'-UTR mRNAs in male germ cells.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Samantha H Jonesa Department of Reproductive Medicine , School of Medicine, University of California, San Diego , La Jolla , CA , USA.
Miles Wilkinsona Department of Reproductive Medicine , School of Medicine, University of California, San Diego , La Jolla , CA , USA.
University of California, San Diego · US

Funding

Training in Multi-Scale Analysis of Biological Structure and FunctionT32EB009380 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrew D. McCulloch, Padmini Rangamani · 2009 to 2026
$4.8M
TCR RNA SurveillanceR01GM058595 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WILKINSON, MILES FROME · 1999 to 2012
$4.1M
Modeling and analysis of the mechanochemical processes that govern clathrin-mediated endocytosisR01GM132106 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RANGAMANI, PADMINI · 2020 to 2024
$1.5M
NIBIB NIH HHS T32 EB009380NIGMS NIH HHS R01 GM058595NIGMS NIH HHS R01 GM132106
6 · The paper itself

Abstract

NMD is a highly conserved pathway that degrades specific subsets of RNAs. There is increasing evidence for roles of NMD in development. In this commentary, we focus on spermatogenesis, a process dramatically impeded upon loss or disruption of NMD. NMD requires strict regulation for normal spermatogenesis, as loss of a newly discovered NMD repressor, UPF3A, also causes spermatogenic defects, most prominently during meiosis. We discuss the unusual evolution of UPF3A, whose paralog, UPF3B, has the opposite biochemical function and acts in brain development. We also discuss the regulation of NMD during germ cell development, including in chromatoid bodies, which are specifically found in haploid germ cells. The ability of NMD to coordinately degrade batteries of RNAs in a regulated fashion during development is akin to the action of transcriptional pathways, yet has the advantage of driving rapid changes in gene expression.

Indexed as

Biological EvolutionGene Expression RegulationRNA StabilityAnimalsCell DifferentiationGerm CellsHumansMaleNonsense Mediated mRNA DecayProtein BindingRepressor ProteinsRNA-Binding ProteinsRNA, MessengerSpermatogenesisSubstrate SpecificityTestisRepressor ProteinsRNA-Binding ProteinsRNA, MessengerUPF3A protein, humanneofunctionalizationNMDRNA decayspermatogenesissubfunctionalization

Identifiers

PMID27911186
PMCPMC5324745
OpenAlexW2557767194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.