Evidence map›Paper›PMID 27910109›Full record

ArticleJournal of computational chemistry2017

Electronic absorption spectra of pyridine and nicotine in aqueous solution with a combined molecular dynamics and polarizable QM/MM approach.

Marco Pagliai, Giordano Mancini, Ivan Carnimeo, Nicola De Mitri, Vincenzo Barone

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Structural and Photophysical Properties of Various Polypyridyl Ligands: A Combined Experimental and Computational Study.Chemphyschem : a European journal of chemical physics and physical chemistry · 2020
    Article
  8. Charge Anisotropy of Nitrogen: Where Chemical Intuition Fails.Journal of chemical theory and computation · 2020
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marco PagliaiScuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy.
Giordano ManciniScuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy.
Ivan CarnimeoScuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy.
Nicola De MitriScuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy.
Vincenzo BaroneScuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy.

Funding

European Research Council 320951
6 · The paper itself

Abstract

The electronic absorption spectra of pyridine and nicotine in aqueous solution have been computed using a multistep approach. The computational protocol consists in studying the solute solvation with accurate molecular dynamics simulations, characterizing the hydrogen bond interactions, and calculating electronic transitions for a series of configurations extracted from the molecular dynamics trajectories with a polarizable QM/MM scheme based on the fluctuating charge model. Molecular dynamics simulations and electronic transition calculations have been performed on both pyridine and nicotine. Furthermore, the contributions of solute vibrational effect on electronic absorption spectra have been taken into account in the so called vertical gradient approximation. © 2016 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.

Indexed as

fluctuating chargesH-bondmolecular dynamicsquantum-mechanics/molecular mechanicsTD-DFT

Identifiers

PMID27910109
PMCPMC6680224

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.