Evidence map›Paper›PMID 27909745›Full record

ArticleApplied microbiology and biotechnology2017

Dechlorination of three tetrachlorobenzene isomers by contaminated harbor sludge-derived enrichment cultures follows thermodynamically favorable reactions.

Yue Lu, Javier Ramiro-Garcia, Pieter Vandermeeren, Steffi Herrmann, Danuta Cichocka, Dirk Springael, Siavash Atashgahi, Hauke Smidt

Abstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yue LuLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.
Javier Ramiro-GarciaLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.
Pieter VandermeerenDivision of Soil and Water Management, KU Leuven, Leuven, Belgium.
Steffi HerrmannDivision of Soil and Water Management, KU Leuven, Leuven, Belgium.
Danuta CichockaDivision of Soil and Water Management, KU Leuven, Leuven, Belgium.
Dirk SpringaelDivision of Soil and Water Management, KU Leuven, Leuven, Belgium.
Siavash AtashgahiLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.
Hauke SmidtLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. hauke.smidt@wur.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dechlorination patterns of three tetrachlorobenzene isomers, 1,2,3,4-, 1,2,3,5-, and 1,2,4,5-TeCB, were studied in anoxic microcosms derived from contaminated harbor sludge. The removal of doubly, singly, and un-flanked chlorine atoms was noted in 1,2,3,4- and 1,2,3,5-TeCB fed microcosms, whereas only singly flanked chlorine was removed in 1,2,4,5-TeCB microcosms. The thermodynamically more favorable reactions were selectively followed by the enriched cultures with di- and/or mono-chlorobenzene as the main end products of the reductive dechlorination of all three isomers. Based on quantitative PCR analysis targeting 16S rRNA genes of known organohalide-respiring bacteria, the growth of Dehalococcoides was found to be associated with the reductive dechlorination of all three isomers, while growth of Dehalobacter, another known TeCB dechlorinator, was only observed in one 1,2,3,5-TeCB enriched microcosm among biological triplicates. Numbers of Desulfitobacterium and Geobacter as facultative dechlorinators were rather stable suggesting that they were not (directly) involved in the observed TeCB dechlorination. Bacterial community profiling suggested bacteria belonging to the phylum Bacteroidetes and the order Clostridiales as well as sulfate-reducing members of the class Deltaproteobacteria as putative stimulating guilds that provide electron donor and/or organic cofactors to fastidious dechlorinators. Our results provide a better understanding of thermodynamically preferred TeCB dechlorinating pathways in harbor environments and microbial guilds enriched and active in anoxic TeCB dechlorinating microcosms.

Indexed as

Biodegradation, EnvironmentalChlorineChlorobenzenesChloroflexiDesulfitobacteriumDNA, BacterialGeobacterHumansMicrobial ConsortiaPeptococcaceaeSewageStereoisomerismThermodynamicsWater Pollutants, Chemical1,2,3,4-tetrachlorobenzeneChlorineChlorobenzenesDNA, BacterialSewageWater Pollutants, ChemicalDehalobacterDehalococcoides mccartyiOrganohalide respirationTetrachlorobenzenesThermodynamically favorable reactions

Identifiers

PMID27909745
PMCPMC5320011

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.