Evidence map›Paper›PMID 27909052›Full record

ArticleThe Journal of biological chemistry2017

Spontaneous Unfolding-Refolding of Fibronectin Type III Domains Assayed by Thiol Exchange: THERMODYNAMIC STABILITY CORRELATES WITH RATES OF UNFOLDING RATHER THAN FOLDING.

Riddhi Shah, Tomoo Ohashi, Harold P Erickson, Terrence G Oas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Does iris(in) bring bad news or good news?Eating and weight disorders : EWD · 2018
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Riddhi ShahFrom the Departments of Biochemistry and.
Tomoo OhashiCell Biology, Duke University Medical Center, Durham, North Carolina 27710.
Harold P EricksonFrom the Departments of Biochemistry and h.erickson@cellbio.duke.edu.
Terrence G OasFrom the Departments of Biochemistry and oas@duke.edu.
Duke Medical Center · USDuke University Hospital · US

Funding

EXTRACELLULAR MATRIX AND CELL ATTACHMENT PROTEINSR01CA047056 · NCI · DUKE UNIVERSITY · PI ERICKSON, HAROLD P · 1988 to 2016
$4.7M
Role of protein A structure, folding kinetics and dynamics in S. aureus virulenceR01GM118809 · NIGMS · DUKE UNIVERSITY · PI OAS, TERRENCE GILBERT · 2016 to 2019
$1.2M
EXTRACELLULAR MATRIX AND CELL ATTACHMENT PROTEINSR37CA047056 · NCI · DUKE UNIVERSITY · PI ERICKSON, HAROLD P · 1993 to 2000
$308k
NCI NIH HHS R01 CA047056NCI NIH HHS R37 CA047056NIGMS NIH HHS R01 GM118809
6 · The paper itself

Abstract

Globular proteins are not permanently folded but spontaneously unfold and refold on time scales that can span orders of magnitude for different proteins. A longstanding debate in the protein-folding field is whether unfolding rates or folding rates correlate to the stability of a protein. In the present study, we have determined the unfolding and folding kinetics of 10 FNIII domains. FNIII domains are one of the most common protein folds and are present in 2% of animal proteins. FNIII domains are ideal for this study because they have an identical seven-strand β-sandwich structure, but they vary widely in sequence and thermodynamic stability. We assayed thermodynamic stability of each domain by equilibrium denaturation in urea. We then assayed the kinetics of domain opening and closing by a technique known as thiol exchange. For this we introduced a buried Cys at the identical location in each FNIII domain and measured the kinetics of labeling with DTNB over a range of urea concentrations. A global fit of the kinetics data gave the kinetics of spontaneous unfolding and refolding in zero urea. We found that the folding rates were relatively similar, ∼0.1-1 s

Indexed as

Protein RefoldingProtein UnfoldingFibronectinsHumansProtein DomainsProtein StabilityThermodynamicsUreaFibronectinsUreafibronectinFNIII domainsirisinkineticsprotein foldingprotein stabilityspectroscopythiol exchange

Identifiers

PMID27909052
PMCPMC5247667
OpenAlexW2559286366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.