Evidence map›Paper›PMID 27909050›Full record

ArticleThe Journal of biological chemistry2017

Notch Pathway Is Activated via Genetic and Epigenetic Alterations and Is a Therapeutic Target in Clear Cell Renal Cancer.

Tushar D Bhagat, Yiyu Zou, Shizheng Huang, Jihwan Park, Matthew B Palmer, Caroline Hu, Weijuan Li, Niraj Shenoy, Orsolya Giricz, Gaurav Choudhary and 18 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Notch2 Inhibition and Kidney Cyst Growth in Autosomal Dominant Polycystic Kidney Disease.Journal of the American Society of Nephrology : JASN · 2025
    Article
  3. Review
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  16. Signaling pathways and their potential therapeutic utility in esophageal squamous cell carcinoma.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Review
  17. Review
  18. Notch signaling pathway: architecture, disease, and therapeutics.Signal transduction and targeted therapy · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 4 institutions in 1 country.

Tushar D BhagatFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Yiyu ZouFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Shizheng Huangthe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
Jihwan Parkthe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
Matthew B Palmerthe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
Caroline HuFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Weijuan LiFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Niraj ShenoyFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Orsolya GiriczFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Gaurav ChoudharyFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Yiting YuFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Yi-An Kothe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
María C Izquierdothe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
Ae Seo Deok Parkthe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104.
Nishanth VallumsetlaFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Remi LaurenceFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Robert LopezFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Masako SuzukiFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
James Pullmanthe Department of Pathology, Montefiore Medical Center, Bronx, New York 10467.
Justin KanerFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Benjamin GartrellFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
A Ari Hakimithe Sloan Kettering Cancer Center, New York, New York 10065, and.
John M GreallyFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Bharvin PatelEli Lilly, Indianapolis, Indiana 46221.
Karim BenhadjiEli Lilly, Indianapolis, Indiana 46221.
Kith PradhanFrom the Albert Einstein College of Medicine, Bronx, New York 10461.
Amit VermaFrom the Albert Einstein College of Medicine, Bronx, New York 10461, amit.verma@einstein.yu.edu.
Katalin Susztakthe Renal Electrolyte and Hypertension Division, Department of Medicine and Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104, ksusztak@mail.med.upenn.edu.
Albert Einstein College of Medicine · USUniversity of Pennsylvania · USEli Lilly (United States) · USMontefiore Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Role of the Notch Pathway in Kidney InjuryR01DK076077 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2007 to 2026
$8.0M
Epigenetics of Chronic Kidney DiseaseR01DK087635 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2009 to 2026
$7.0M
Epigenetic drivers and biomarkers of diabetic kidney diseaseDP3DK108220 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUSZTAK, KATALIN · 2015 to 2015
$2.4M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA013330NIDDK NIH HHS DP3 DK108220NIDDK NIH HHS P30 DK020541NIDDK NIH HHS R01 DK076077NIDDK NIH HHS R01 DK087635
6 · The paper itself

Abstract

Clear cell renal cell carcinoma (CCRCC) is an incurable malignancy in advanced stages and needs newer therapeutic targets. Transcriptomic analysis of CCRCCs and matched microdissected renal tubular controls revealed overexpression of NOTCH ligands and receptors in tumor tissues. Examination of the TCGA RNA-seq data set also revealed widespread activation of NOTCH pathway in a large cohort of CCRCC samples. Samples with NOTCH pathway activation were also clinically distinct and were associated with better overall survival. Parallel DNA methylation and copy number analysis demonstrated that both genetic and epigenetic alterations led to NOTCH pathway activation in CCRCC. NOTCH ligand JAGGED1 was overexpressed and associated with loss of CpG methylation of H3K4me1-associated enhancer regions. JAGGED2 was also overexpressed and associated with gene amplification in distinct CCRCC samples. Transgenic expression of intracellular NOTCH1 in mice with tubule-specific deletion of VHL led to dysplastic hyperproliferation of tubular epithelial cells, confirming the procarcinogenic role of NOTCH in vivo Alteration of cell cycle pathways was seen in murine renal tubular cells with NOTCH overexpression, and molecular similarity to human tumors was observed, demonstrating that human CCRCC recapitulates features and gene expression changes observed in mice with transgenic overexpression of the Notch intracellular domain. Treatment with the γ-secretase inhibitor LY3039478 led to inhibition of CCRCC cells in vitro and in vivo In summary, these data reveal the mechanistic basis of NOTCH pathway activation in CCRCC and demonstrate this pathway to a potential therapeutic target.

Indexed as

Signal TransductionAmyloid Precursor Protein SecretasesAnimalsCarcinoma, Renal CellCpG IslandsDNA MethylationDNA, NeoplasmFemaleHumansJagged-1 ProteinKidney NeoplasmsMaleMiceNeoplasm ProteinsProtease InhibitorsReceptor, Notch1Amyloid Precursor Protein SecretasesDNA, NeoplasmJAG1 protein, humanJagged-1 ProteinNeoplasm ProteinsNOTCH1 protein, humanNotch1 protein, mouseProtease InhibitorsReceptor, Notch1cancer biologycancer therapyDNA methylationNotch pathwayrenal physiology

Identifiers

PMID27909050
PMCPMC5247657
OpenAlexW2557303080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.