Evidence map›Paper›PMID 27906990›Full record

ArticlePloS one2016

Surveillance of Helicobacter pylori Antibiotic Susceptibility in Indonesia: Different Resistance Types among Regions and with Novel Genetic Mutations.

Muhammad Miftahussurur, Ari Fahrial Syam, Iswan Abbas Nusi, Dadang Makmun, Langgeng Agung Waskito, Lukman Hakim Zein, Fardah Akil, Willy Brodus Uwan, David Simanjuntak, I Dewa Nyoman Wibawa and 14 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 74 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Analysis of antibiotic susceptibility and genomic characteristics of Helicobacter pylori by whole-genome resequencing in Northern China.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  8. Biofilm ofAntibiotics (Basel, Switzerland) · 2023
    Review
  9. Antibiotic Resistance, Susceptibility Testing and Stewardship inInternational journal of molecular sciences · 2023
    Review
  10. Global Antimicrobial Resistance Gene Study ofAntibiotics (Basel, Switzerland) · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Prevalence of antibiotic resistance ofAmerican journal of translational research · 2022
    Article
  19. Serum pepsinogen level as a biomarker for atrophy, reflux esophagitis, and gastric cancer screening in Indonesia.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2022
    Article
  20. Overview ofGut and liver · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 3 countries.

Muhammad MiftahussururDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Ari Fahrial SyamDivision of Gastroenterology, Department of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia.
Iswan Abbas NusiDivision of Gastroentero-Hepatology, Department of Internal Medicine, Universitas Airlangga Faculty of Medicine, Surabaya, Indonesia.
Dadang MakmunDivision of Gastroenterology, Department of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia.
Langgeng Agung WaskitoDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Lukman Hakim ZeinDivision of Gastroentero-Hepatology, Department of Internal Medicine, Faculty of Medicine, University of Sumatera Utara, Medan, Indonesia.
Fardah AkilCenter of Gastroentero-Hepatology, Department of Internal Medicine, Faculty of Medicine, Hasanuddin University, Makassar, Indonesia.
Willy Brodus UwanDepartment of Internal Medicine, Santo Antonius Hospital, Pontianak, Indonesia.
David SimanjuntakDepartment of Internal Medicine, Yowari Hospital, Jayapura, Indonesia.
I Dewa Nyoman WibawaDivision of Gastroentero-hepatology, Department of Internal Medicine, Faculty of Medicine University of Udayana, Denpasar, Indonesia.
Jimmy Bradley WalelengDivision of Gastroentero-hepatology, Department of Internal Medicine, Faculty of Medicine, University of Sam Ratulangi, Prof. Dr. RD Kandou Hospital, Manado, Indonesia.
Alexander Michael Joseph SaudaleDepartment of Internal Medicine, Prof. Dr. W. Z. Johannes General Hospital, Kupang, Indonesia.
Fauzi YusufDivision of Gastroentero-hepatology, Department of Internal Medicine, Dr. Zainoel Abidin General Hospital, Banda Aceh, Indonesia.
Syifa MustikaDivision of Gastroentero-hepatology, Department of Internal Medicine, Dr. Saiful Anwar General Hospital, Malang, Indonesia.
Pangestu AdiInstitute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.
Ummi MaimunahDivision of Gastroentero-Hepatology, Department of Internal Medicine, Universitas Airlangga Faculty of Medicine, Surabaya, Indonesia.
Hasan MaulahelaDivision of Gastroenterology, Department of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia.
Yudith Annisa Ayu RezkithaInstitute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.
Phawinee SubsomwongDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
NasronudinInstitute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.
Dadik RahardjoInstitute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.
Rumiko SuzukiDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Junko AkadaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Yoshio YamaokaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Airlangga University · IDOita University · JPUniversity of Indonesia · IDHasanuddin University · IDRSUD Prof. Dr. Saiful Anwar Malang · IDSam Ratulangi University · IDUdayana University · IDUniversitas Muhammadiyah Aceh · IDUniversity of North Sumatra · ID

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

Information regarding Helicobacter pylori antibiotic resistance in Indonesia was previously inadequate. We assessed antibiotic susceptibility for H. pylori in Indonesia, and determined the association between virulence genes or genetic mutations and antibiotic resistance. We recruited 849 dyspeptic patients who underwent endoscopy in 11 cities in Indonesia. E-test was used to determine the minimum inhibitory concentration of five antibiotics. PCR-based sequencing assessed mutations in 23S rRNA, rdxA, gyrA, gyrB, and virulence genes. Next generation sequencing was used to obtain full-length sequences of 23S rRNA, infB, and rpl22. We cultured 77 strains and identified 9.1% with clarithromycin resistance. Low prevalence was also found for amoxicillin and tetracycline resistance (5.2% and 2.6%, respectively). In contrast, high resistance rates to metronidazole (46.7%) and levofloxacin (31.2%) were demonstrated. Strains isolated from Sumatera Island had significantly higher metronidazole resistance than those from other locations. Metronidazole resistant strains had highly distributed rdxA amino acid substitutions and the 23S rRNA A2143G mutation was associated with clarithromycin resistance (42.9%). However, one strain with the highest MIC value had a novel mutation in rpl22 without an A2143G mutation. Mutation at Asn-87 and/or Asp-91 of gyrA was associated with levofloxacin-resistance and was related to gyrB mutations. In conclusions, although this is a pilot study for a larger survey, our current data show that Indonesian strains had the high prevalence of metronidazole and levofloxacin resistance with low prevalence of clarithromycin, amoxicillin, and tetracycline resistance. Nevertheless, clarithromycin- or metronidazole-based triple therapy should be administered with caution in some regions of Indonesia.

Indexed as

AdolescentAdultAgedAmoxicillinClarithromycinDrug Resistance, MicrobialEndoscopyFemaleFrameshift MutationHelicobacter InfectionsHelicobacter pyloriHumansLevofloxacinMaleMetronidazoleMiddle AgedAmoxicillinClarithromycinLevofloxacinMetronidazoleRNA, Ribosomal, 23S

Identifiers

PMID27906990
PMCPMC5131997
OpenAlexW2558206997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.