Evidence map›Paper›PMID 27905546›Full record

ArticleScientific reports2016

Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae.

Xiao-Jie Cheng, Bin He, Lin Chen, Su-Qin Xiao, Jian Fu, Yue Chen, Teng-Qiong Yu, Zai-Quan Cheng, Hong Feng

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
9.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A review of approaches to control bacterial leaf blight in rice.World journal of microbiology & biotechnology · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xiao-Jie ChengKey Laboratory of Bio-resources and Eco-environment, Ministry of Education, Sichuan Key laboratory of Molecular Biology and Biotechnology, College of Life Sciences, Sichuan University, Chengdu 610064, Sichuan, P. R. China.
Bin HeKey Laboratory of Bio-resources and Eco-environment, Ministry of Education, Sichuan Key laboratory of Molecular Biology and Biotechnology, College of Life Sciences, Sichuan University, Chengdu 610064, Sichuan, P. R. China.
Lin ChenBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Su-Qin XiaoBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Jian FuBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Yue ChenBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Teng-Qiong YuBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Zai-Quan ChengBiotechnology &Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650223, Yunnan, China.
Hong FengKey Laboratory of Bio-resources and Eco-environment, Ministry of Education, Sichuan Key laboratory of Molecular Biology and Biotechnology, College of Life Sciences, Sichuan University, Chengdu 610064, Sichuan, P. R. China.
Yunnan Academy of Agricultural Sciences · CNSichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice bacterial blight (BB), caused by Xanthomonas oryzae pv. oryzae (Xoo), is one of the devastating diseases of rice. It is well established that the wild rice Oryza meyeriana is immune to BB. In this study, the transcriptomic analysis was carried out by RNA sequencing of O. meyeriana leaves, inoculated with Xoo to understand the transcriptional responses and interaction between the host and pathogen. Totally, 57,313 unitranscripts were de novo assembled from 58.7 Gb clean reads and 14,143 unitranscripts were identified after Xoo inoculation. The significant metabolic pathways related to the disease resistance enriched by KEGG, were revealed to plant-pathogen interaction, phytohormone signaling, ubiquitin mediated proteolysis, and phenylpropanoid biosynthesis. Further, many disease resistance genes were also identified to be differentially expressed in response to Xoo infection. Conclusively, the present study indicated that the induced innate immunity comprise the basal defence frontier of O. meyeriana against Xoo infection. And then, the resistance genes are activated. Simultaneously, the other signaling transduction pathways like phytohormones and ubiquitin mediated proteolysis may contribute to the disease defence through modulation of the disease-related genes or pathways. This could be an useful information for further investigating the molecular mechanism associated with disease resistance in O. meyeriana.

Indexed as

Gene Expression ProfilingGene Regulatory NetworksOryzaPlant DiseasesTranscriptomeDisease ResistanceXanthomonas

Identifiers

PMID27905546
PMCPMC5131272
OpenAlexW2558565829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.