Evidence map›Paper›PMID 27905516›Full record

ArticleScientific reports2016

Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold.

Tea Pavkov-Keller, Gernot A Strohmeier, Matthias Diepold, Wilco Peeters, Natascha Smeets, Martin Schürmann, Karl Gruber, Helmut Schwab, Kerstin Steiner

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Structural Basis for Allostery in PLP-dependent Enzymes.Frontiers in molecular biosciences · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Transaminases for industrial biocatalysis: novel enzyme discovery.Applied microbiology and biotechnology · 2020
    Review
  15. Article
  16. Amine transaminases in chiral amines synthesis: recent advances and challenges.World journal of microbiology & biotechnology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Tea Pavkov-Kelleracib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Gernot A Strohmeieracib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Matthias Diepoldacib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Wilco PeetersDSM, Ahead R&D - Innovative Synthesis BV, NL-6167 RD Geleen, The Netherlands.
Natascha SmeetsDSM, Ahead R&D - Innovative Synthesis BV, NL-6167 RD Geleen, The Netherlands.
Martin SchürmannDSM, Ahead R&D - Innovative Synthesis BV, NL-6167 RD Geleen, The Netherlands.
Karl Gruberacib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Helmut Schwabacib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Kerstin Steineracib, Austrian Centre of Industrial Biotechnology GmbH, 8010 Graz, Austria.
Austrian Centre of Industrial Biotechnology (Austria) · ATDSM (Netherlands) · NLInstitute of Molecular Biotechnology · ATUniversity of Graz · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transaminases are useful biocatalysts for the production of amino acids and chiral amines as intermediates for a broad range of drugs and fine chemicals. Here, we describe the discovery and characterisation of new transaminases from microorganisms which were enriched in selective media containing (R)-amines as sole nitrogen source. While most of the candidate proteins were clearly assigned to known subgroups of the fold IV family of PLP-dependent enzymes by sequence analysis and characterisation of their substrate specificity, some of them did not fit to any of these groups. The structure of one of these enzymes from Curtobacterium pusillum, which can convert d-amino acids and various (R)-amines with high enantioselectivity, was solved at a resolution of 2.4 Å. It shows significant differences especially in the active site compared to other transaminases of the fold IV family and thus indicates the existence of a new subgroup within this family. Although the discovered transaminases were not able to convert ketones in a reasonable time frame, overall, the enrichment-based approach was successful, as we identified two amine transaminases, which convert (R)-amines with high enantioselectivity, and can be used for a kinetic resolution of 1-phenylethylamine and analogues to obtain the (S)-amines with e.e.s >99%.

Indexed as

Protein FoldingActinobacteriaBacterial ProteinsCrystallography, X-RaySubstrate SpecificityTransaminasesBacterial ProteinsTransaminases

Identifiers

PMID27905516
PMCPMC5131300
OpenAlexW2559559118

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.