Evidence map›Paper›PMID 27905489›Full record

ArticleScientific reports2016

The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity.

Samer G Alam, Qiao Zhang, Nripesh Prasad, Yuan Li, Srikar Chamala, Ram Kuchibhotla, Birendra Kc, Varun Aggarwal, Shristi Shrestha, Angela L Jones and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 150 citations in OpenAlex.

  1. Review
  2. Nuclear dysfunction in aging and neurodegeneration.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
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  10. Force-dependent structural dynamics of the giant nesprin-2.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Review
  12. Lamins' role in osteosarcoma.Frontiers in cell and developmental biology · 2026
    Review
  13. Review
  14. Nuclear destabilisation - a possible genesis of cancer?Biological reviews of the Cambridge Philosophical Society · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. The LINC Complex Regulates Tendon Elastic Modulus, Collagen Crimp, and Lateral Expansion During Early Postnatal Development.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2025
    Article
  19. Article
  20. Review

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Samer G AlamDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
Qiao ZhangDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
Nripesh PrasadHudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA.
Yuan LiDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
Srikar ChamalaDepartment of Biology, University of Florida, Cancer and Genetics Research Complex, 2033 Mowry Road, Gainesville, FL 32610, USA.
Ram KuchibhotlaDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
Birendra KcSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104, USA, Gainesville, FL 32610, USA.
Varun AggarwalDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
Shristi ShresthaHudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA.
Angela L JonesHudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA.
Shawn E LevyHudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA.
Kyle J RouxSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104, USA, Gainesville, FL 32610, USA.
Jeffrey A NickersonDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Tanmay P LeleDepartment of Chemical Engineering, University of Florida, Bldg. 723, Gainesville, FL 32611, USA.
University of Florida · USHudsonAlpha Institute for Biotechnology · USSanford Research · USUniversity of Massachusetts Chan Medical School · US

Funding

Yeast 2 HybridP20GM103620 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2023
$24.2M
The Impact of PD-1 Inhibition on Immune-Response to ChemoradiotherapyP20GM103548 · NIGMS · SANFORD RESEARCH/USD · PI MISKIMINS, W KEITH · 2012 to 2020
$20.8M
SUBSTRATE RIGIDITY AND GENE EXPRESSION: Role of Nuclear TensionR01EB014869 · NIBIB · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2019
$3.4M
Cytoskeletal force generation on the nucleusR01GM102486 · NIGMS · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2015
$1.2M
NIBIB NIH HHS R01 EB014869NIGMS NIH HHS P20 GM103548NIGMS NIH HHS P20 GM103620NIGMS NIH HHS R01 GM102486
6 · The paper itself

Abstract

Mechanical integration of the nucleus with the extracellular matrix (ECM) is established by linkage between the cytoskeleton and the nucleus. This integration is hypothesized to mediate sensing of ECM rigidity, but parsing the function of nucleus-cytoskeleton linkage from other mechanisms has remained a central challenge. Here we took advantage of the fact that the LINC (linker of nucleoskeleton and cytoskeleton) complex is a known molecular linker of the nucleus to the cytoskeleton, and asked how it regulates the sensitivity of genome-wide transcription to substratum rigidity. We show that gene mechanosensitivity is preserved after LINC disruption, but reversed in direction. Combined with myosin inhibition studies, we identify genes that depend on nuclear tension for their regulation. We also show that LINC disruption does not attenuate nuclear shape sensitivity to substrate rigidity. Our results show for the first time that the LINC complex facilitates mechano-regulation of expression across the genome.

Indexed as

AnimalsCell LineCell NucleusCytoskeletonExtracellular MatrixGene Expression RegulationHumansMiceNIH 3T3 CellsRNA, MessengerSequence Analysis, RNATranscription, GeneticRNA, Messenger

Identifiers

PMID27905489
PMCPMC5131312
OpenAlexW2558236976

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.