Evidence map›Paper›PMID 27905486›Full record

ArticleScientific reports2016

Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP).

Bum Han Ryu, Tri Duc Ngo, Wanki Yoo, Sojeong Lee, Boo-Young Kim, Euijoo Lee, Kyeong Kyu Kim, T Doohun Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Structural and biochemical characterization ofProcess biochemistry (Barking, London, England) · 2023
    Article
  3. β-Lactams from the Ocean.Marine drugs · 2023
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Bum Han RyuDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Tri Duc NgoDepartment of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon, 440-746, Korea.
Wanki YooDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Sojeong LeeDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Boo-Young KimDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Euijoo LeeDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Kyeong Kyu KimDepartment of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon, 440-746, Korea.
T Doohun KimDepartment of Chemistry, College of Natural Science, Sookmyung Women's University, Seoul 140-742, Korea.
Sookmyung Women's University · KRSungkyunkwan University · KRSamsung (South Korea) · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Considering that the prevalence of antibiotic-resistant pathogenic bacteria is largely increasing, a thorough understanding of penicillin-binding proteins (PBPs) is of great importance and crucial significance because this enzyme family is a main target of β-lactam-based antibiotics. In this work, combining biochemical and structural analysis, we present new findings that provide novel insights into PBPs. Here, a novel PBP homologue (CcEstA) from Caulobacter crescentus CB15 was characterized using native-PAGE, mass spectrometry, gel filtration, CD spectroscopy, fluorescence, reaction kinetics, and enzyme assays toward various substrates including nitrocefin. Furthermore, the crystal structure of CcEstA was determined at a 1.9 Å resolution. Structural analyses showed that CcEstA has two domains: a large α/β domain and a small α-helix domain. A nucleophilic serine (Ser

Indexed as

Amino Acid SequenceBacterial ProteinsCarboxylic Ester HydrolasesCatalytic DomainCaulobacter crescentusCircular DichroismCloning, MolecularCrystallography, X-RayKineticsModels, MolecularPenicillin-Binding ProteinsProtein Structure, SecondarySerineBacterial ProteinsCarboxylic Ester HydrolasesEstA protein, bacteriaPenicillin-Binding ProteinsSerine

Identifiers

PMID27905486
PMCPMC5131357
OpenAlexW2557567907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.