Evidence map›Paper›PMID 27905446›Full record

ArticleNature2016

Genomic evolution and chemoresistance in germ-cell tumours.

Amaro Taylor-Weiner, Travis Zack, Elizabeth O'Donnell, Jennifer L Guerriero, Brandon Bernard, Anita Reddy, G Celine Han, Saud AlDubayan, Ali Amin-Mansour, Steven E Schumacher and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed, 1 pooled it
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 1 synthesis or guideline pooled it, 168 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. EMT and cancer stem cells: Drivers of therapy resistance and promising therapeutic targets.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2025
    Review
  10. Review
  11. A Thiopurine-like Mutagenic Process Defines TGCT Subtypes.bioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. A rare germline BMP15 missense mutation causes hereditary ovarian immature teratoma in human.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 3 countries.

Amaro Taylor-WeinerDivision of Medical Sciences, Harvard University, Boston, Massachusetts 02115, USA.
Travis ZackDivision of Medical Sciences, Harvard University, Boston, Massachusetts 02115, USA.
Elizabeth O'DonnellDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Jennifer L GuerrieroDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Brandon BernardDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Anita ReddyDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
G Celine HanCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Saud AlDubayanDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Massachusetts 02115, USA.
Ali Amin-MansourCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Steven E SchumacherCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Kevin LitchfieldDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Clare TurnbullDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Stacey GabrielCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Rameen BeroukhimCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Gad GetzCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Scott L CarterCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Michelle S HirschDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA.
Anthony LetaiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Christopher SweeneyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Eliezer M Van AllenCancer Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Broad Institute · USDana-Farber Cancer Institute · USBoston Medical Center · USInstitute of Cancer Research · GBBrigham and Women's Hospital · USHarvard University · USKing Saud bin Abdulaziz University for Health Sciences · SA

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Resistance to Emerging Androgen Deprivation Therapies in Prostate CancerK08CA188615 · NCI · DANA-FARBER CANCER INST · PI VAN ALLEN, ELIEZER M · 2014 to 2017
$708k
NCI NIH HHS K08 CA188615NHGRI NIH HHS T32 HG002295NHGRI NIH HHS U54 HG003067
6 · The paper itself

Abstract

Germ-cell tumours (GCTs) are derived from germ cells and occur most frequently in the testes. GCTs are histologically heterogeneous and distinctly curable with chemotherapy. Gains of chromosome arm 12p and aneuploidy are nearly universal in GCTs, but specific somatic genomic features driving tumour initiation, chemosensitivity and progression are incompletely characterized. Here, using clinical whole-exome and transcriptome sequencing of precursor, primary (testicular and mediastinal) and chemoresistant metastatic human GCTs, we show that the primary somatic feature of GCTs is highly recurrent chromosome arm level amplifications and reciprocal deletions (reciprocal loss of heterozygosity), variations that are significantly enriched in GCTs compared to 19 other cancer types. These tumours also acquire KRAS mutations during the development from precursor to primary disease, and primary testicular GCTs (TGCTs) are uniformly wild type for TP53. In addition, by functional measurement of apoptotic signalling (BH3 profiling) of fresh tumour and adjacent tissue, we find that primary TGCTs have high mitochondrial priming that facilitates chemotherapy-induced apoptosis. Finally, by phylogenetic analysis of serial TGCTs that emerge with chemotherapy resistance, we show how TGCTs gain additional reciprocal loss of heterozygosity and that this is associated with loss of pluripotency markers (NANOG and POU5F1) in chemoresistant teratomas or transformed carcinomas. Our results demonstrate the distinct genomic features underlying the origins of this disease and associated with the chemosensitivity phenotype, as well as the rare progression to chemoresistance. These results identify the convergence of cancer genomics, mitochondrial priming and GCT evolution, and may provide insights into chemosensitivity and resistance in other cancers.

Indexed as

Drug Resistance, NeoplasmApoptosisDisease ProgressionEvolution, MolecularExomeGenome, HumanGenomicsHumansLoss of HeterozygosityMaleMitochondriaMutationNanog Homeobox ProteinNeoplasm MetastasisNeoplasms, Germ Cell and EmbryonalOctamer Transcription Factor-3KRAS protein, humanNanog Homeobox ProteinNANOG protein, humanOctamer Transcription Factor-3POU5F1 protein, humanProto-Oncogene Proteins p21(ras)TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID27905446
PMCPMC5553306
OpenAlexW2557360435

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.