Evidence map›Paper›PMID 27903915›Full record

ArticleNucleic acids research2017

MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma.

Dongxue Wang, Hideharu Hashimoto, Xing Zhang, Benjamin G Barwick, Sagar Lonial, Lawrence H Boise, Paula M Vertino, Xiaodong Cheng

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 108 citations in OpenAlex.

  1. Pooled it
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  17. bioRxiv : the preprint server for biology · 2023
    Article
  18. Physicochemical models of protein-DNA binding with standard and modified base pairs.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Dongxue WangDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.
Hideharu HashimotoDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.
Xing ZhangDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.
Benjamin G BarwickDepartment of Radiation Oncology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Sagar LonialDepartment of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Lawrence H BoiseDepartment of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Paula M VertinoDepartment of Radiation Oncology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Xiaodong ChengDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.
Emory University · USThe University of Texas MD Anderson Cancer Center · US

Funding

GENESIS AND CONSEQUENCES OF ABERRANT DNA METHYLATIONR01CA077337 · NCI · EMORY UNIVERSITY · PI VERTINO, PAULA M. · 1998 to 2016
$3.4M
Epigenetic Programming of B cell Terminal DifferentiationF31AI112261 · NIAID · EMORY UNIVERSITY · PI BARWICK, BENJAMIN GABRIEL · 2014 to 2016
$120k
NCI NIH HHS R01 CA077337NIAID NIH HHS F31 AI112261
6 · The paper itself

Abstract

The oncogenic transcription factor MYC and its binding partner MAX regulate gene expression by binding to DNA at enhancer-box (E-box) elements 5΄-CACGTG-3΄. In mammalian genomes, the central E-box CpG has the potential to be methylated at the 5-position of cytosine (5mC), or to undergo further oxidation to the 5-hydroxymethyl (5hmC), 5-formyl (5fC), or 5-carboxyl (5caC) forms. We find that MAX exhibits the greatest affinity for a 5caC or unmodified C-containing E-box, and much reduced affinities for the corresponding 5mC, 5hmC or 5fC forms. Crystallization of MAX with a 5caC modified E-box oligonucleotide revealed that MAX Arg36 recognizes 5caC using a 5caC-Arg-Guanine triad, with the next nearest residue to the carboxylate group being Arg60. In an analysis of >800 primary multiple myelomas, MAX alterations occurred at a frequency of ∼3%, more than half of which were single nucleotide substitutions affecting a basic clamp-like interface important for DNA interaction. Among these, arginines 35, 36 and 60 were the most frequently altered. In vitro binding studies showed that whereas mutation of Arg36 (R36W) or Arg35 (R35H/L) completely abolished DNA binding, mutation of Arg60 (R60Q) significantly reduced DNA binding, but retained a preference for the 5caC modified E-box. Interestingly, MAX alterations define a subset of myeloma patients with lower MYC expression and a better overall prognosis. Together these data indicate that MAX can act as a direct epigenetic sensor of E-box cytosine modification states and that local CpG modification and MAX variants converge to modulate the MAX-MYC transcriptional network.

Indexed as

E-Box ElementsArginineBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCpG IslandsCytosineDNAEpigenesis, GeneticMultiple MyelomaMutationProtein BindingProtein ConformationRepressor Proteins5-carboxylcytosineArginineBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCytosineDNAMNT protein, humanRepressor Proteins

Identifiers

PMID27903915
PMCPMC5389568
OpenAlexW2559026422

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.