Evidence map›Paper›PMID 27903907›Full record

ArticleNucleic acids research2017

Chromatin binding of Gcn5 in Drosophila is largely mediated by CP190.

Tamer Ali, Marcus Krüger, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Rainer Renkawitz

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tamer AliInstitute for Genetics, Justus-Liebig-University, D35392 Giessen, Germany.
Marcus KrügerCECAD Research Center, University of Cologne, D50931 Cologne, Germany.
Sabin BhujuHelmholtz Centre for Infection Research, D38124 Braunschweig, Germany.
Michael JarekHelmholtz Centre for Infection Research, D38124 Braunschweig, Germany.
Marek BartkuhnInstitute for Genetics, Justus-Liebig-University, D35392 Giessen, Germany.
Rainer RenkawitzInstitute for Genetics, Justus-Liebig-University, D35392 Giessen, Germany.
Justus-Liebig-Universität Gießen · DEHelmholtz Centre for Infection Research · DEUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Centrosomal 190 kDa protein (CP190) is a promoter binding factor, mediates long-range interactions in the context of enhancer-promoter contacts and in chromosomal domain formation. All Drosophila insulator proteins bind CP190 suggesting a crucial role in insulator function. CP190 has major effects on chromatin, such as depletion of nucleosomes, high nucleosomal turnover and prevention of heterochromatin expansion. Here, we searched for enzymes, which might be involved in CP190 mediated chromatin changes. Eighty percent of the genomic binding sites of the histone acetyltransferase Gcn5 are colocalizing with CP190 binding. Depletion of CP190 reduces Gcn5 binding to chromatin. Binding dependency was further supported by Gcn5 mediated co-precipitation of CP190. Gcn5 is known to activate transcription by histone acetylation. We used the dCas9 system to target CP190 or Gcn5 to a Polycomb repressed and H3K27me3 marked gene locus. Both, CP190 as well as Gcn5, activate this locus, thus supporting the model that CP190 recruits Gcn5 and thereby activates chromatin.

Indexed as

Transcriptional ActivationAnimalsBinding SitesCells, CulturedChromatinDrosophilaDrosophila ProteinsHistone AcetyltransferasesMicrotubule-Associated ProteinsNuclear Proteinsp300-CBP-Associated FactorChromatinCP190 protein, DrosophilaDrosophila ProteinsGCN5 protein, DrosophilaHistone AcetyltransferasesMicrotubule-Associated ProteinsNuclear Proteinsp300-CBP-Associated Factor

Identifiers

PMID27903907
PMCPMC5389606
OpenAlexW2558663184

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.