Evidence map›Paper›PMID 27903891›Full record

ArticleNucleic acids research2017

Cloning-independent markerless gene editing in Streptococcus sanguinis: novel insights in type IV pilus biology.

Ishwori Gurung, Jamie-Lee Berry, Alexander M J Hall, Vladimir Pelicic

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Expanding the genetic toolbox forApplied and environmental microbiology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. PilB fromProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Gram-Positive Type IV Pili and Competence.Microbiology spectrum · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Structure of the competence pilus major pilin ComGC inThe Journal of biological chemistry · 2017
    Article
  20. Recombineering inFrontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ishwori GurungMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.
Jamie-Lee BerryMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.
Alexander M J HallMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.
Vladimir PelicicMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.
Imperial College London · GB

Funding

Medical Research Council MR/J006874/1Medical Research Council MR/L008408/1
6 · The paper itself

Abstract

Streptococcus sanguinis, a naturally competent opportunistic human pathogen, is a Gram-positive workhorse for genomics. It has recently emerged as a model for the study of type IV pili (Tfp)-exceptionally widespread and important prokaryotic filaments. To enhance genetic manipulation of Streptococcus sanguinis, we have developed a cloning-independent methodology, which uses a counterselectable marker and allows sophisticated markerless gene editing in situ. We illustrate the utility of this methodology by answering several questions regarding Tfp biology by (i) deleting single or mutiple genes, (ii) altering specific bases in genes of interest, and (iii) engineering genes to encode proteins with appended affinity tags. We show that (i) the last six genes in the pil locus harbouring all the genes dedicated to Tfp biology play no role in piliation or Tfp-mediated motility, (ii) two highly conserved Asp residues are crucial for enzymatic activity of the prepilin peptidase PilD and (iii) that pilin subunits with a C-terminally appended hexa-histidine (6His) tag are still assembled into functional Tfp. The methodology for genetic manipulation we describe here should be broadly applicable.

Indexed as

Bacterial ProteinsCell EngineeringEndopeptidasesFimbriae ProteinsGene DeletionGene EditingGenetic MarkersHistidineMutation, MissenseOligopeptidesProtein EngineeringStreptococcusBacterial ProteinsEndopeptidasesFimbriae ProteinsGenetic MarkersHis-His-His-His-His-HisHistidineOligopeptidesprepilin peptidase protein, Bacteria

Identifiers

PMID27903891
PMCPMC5389465
OpenAlexW2557749219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.