Evidence map›Paper›PMID 27900472›Full record

ArticlePlanta2017

Tissue-specific expression of telomerase reverse transcriptase gene variants in Nicotiana tabacum.

Jana Fišerová Jurečková, Eva Sýkorová, Said Hafidh, David Honys, Jiří Fajkus, Miloslava Fojtová

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The telomere-to-telomere genome ofHorticulture research · 2023
    Article
  5. Origin and Fates ofInternational journal of molecular sciences · 2021
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jana Fišerová JurečkováMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC) and Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.
Eva SýkorováInstitute of Biophysics, Academy of Sciences of the Czech Republic v.v.i., Královopolská 135, 612 65, Brno, Czech Republic.
Said HafidhInstitute of Experimental Botany, Academy of Sciences of the Czech Republic v.v.i., Rozvojová 263, 165 02, Prague, Czech Republic.
David HonysInstitute of Experimental Botany, Academy of Sciences of the Czech Republic v.v.i., Rozvojová 263, 165 02, Prague, Czech Republic.
Jiří FajkusMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC) and Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.
Miloslava FojtováMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC) and Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic. fojtova@sci.muni.cz.ORCID http://orcid.org/0000-0002-2419-2487
Central European Institute of Technology · CZCzech Academy of Sciences, Institute of Experimental Botany · CZCzech Academy of Sciences · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionIn tobacco, three sequence variants of the TERT gene have been described. We revealed unbalanced levels of TERT variant transcripts in vegetative tobacco tissues and enhanced TERT transcription and telomerase activity in reproductive tissues. Telomerase is a ribonucleoprotein complex responsible for the maintenance of telomeres, structures delimiting ends of linear eukaryotic chromosomes. In the Nicotiana tabacum (tobacco) allotetraploid plant, three sequence variants (paralogs) of the gene coding for the telomerase reverse transcriptase subunit (TERT) have been described, two of them derived from the maternal N. sylvestris genome (TERT_Cs, TERT_D) and one originated from the N. tomentosiformis paternal genome (TERT_Ct). In this work, we analyzed the transcription of TERT variants in correlation with telomerase activity in tobacco tissues. High and approximately comparable levels of TERT_Ct and TERT_Cs transcripts were detected in seedlings, roots, flower buds and leaves, while the transcript of the TERT_D variant was markedly underrepresented. Similarly, in N. sylvestris tissues, TERT_Cs transcript significantly predominated. A specific pattern of TERT transcripts was found in samples of tobacco pollen with the TERT_Cs variant clearly dominating particularly at the early stage of pollen development. Detailed analysis of TERT_C variants representation in functionally distinct fractions of pollen transcriptome revealed their prevalence in large ribonucleoprotein particles encompassing translationally silent mRNA; only a minority of TERT_Ct and TERT_Cs transcripts were localized in actively translated polysomes. Histones of the TERT_C chromatin were decorated predominantly with the euchromatin-specific epigenetic modification in both telomerase-positive and telomerase-negative tobacco tissues. We conclude that the existence and transcription pattern of tobacco TERT paralogs represents an interesting phenomenon and our results indicate its functional significance. Nicotiana species have again proved to be appropriate and useful model plants in telomere biology studies.

Indexed as

Gene Expression Regulation, PlantGenetic VariationCell NucleusChromatin ImmunoprecipitationEuchromatinHistonesNicotianaOrgan SpecificityPollen TubePolyribosomesProtein Processing, Post-TranslationalRNA, MessengerTelomeraseTranscription, GeneticEuchromatinHistonesRNA, MessengerTelomeraseGene sequence variantPollenPolyploidsTelomeraseTelomereTranscription

Identifiers

PMID27900472
OpenAlexW2557601529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.