Evidence map›Paper›PMID 27899881›Full record

ArticleFrontiers in molecular neuroscience2016

Transcriptomics of Environmental Enrichment Reveals a Role for Retinoic Acid Signaling in Addiction.

Yafang Zhang, Fanping Kong, Elizabeth J Crofton, Steven N Dragosljvich, Mala Sinha, Dingge Li, Xiuzhen Fan, Shyny Koshy, Jonathan D Hommel, Heidi M Spratt and 2 more

Abstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Changes in nucleus accumbens core translatome accompanying incubation of cocaine craving.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yafang ZhangCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Fanping KongDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, GalvestonTX, USA; Biomedical Informatics Program, The University of Texas Medical Branch, GalvestonTX, USA.
Elizabeth J CroftonCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Steven N DragosljvichCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Mala SinhaDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, GalvestonTX, USA; Biomedical Informatics Program, The University of Texas Medical Branch, GalvestonTX, USA; Sealy Center for Molecular Medicine, Institute for Translational Science, The University of Texas Medical Branch, GalvestonTX, USA.
Dingge LiCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Xiuzhen FanCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Shyny KoshyCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.
Jonathan D HommelCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA.
Heidi M SprattDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, GalvestonTX, USA; Biomedical Informatics Program, The University of Texas Medical Branch, GalvestonTX, USA; Sealy Center for Molecular Medicine, Institute for Translational Science, The University of Texas Medical Branch, GalvestonTX, USA; Department of Preventive Medicine and Community Health, The University of Texas Medical Branch, GalvestonTX, USA.
Bruce A LuxonDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, GalvestonTX, USA; Biomedical Informatics Program, The University of Texas Medical Branch, GalvestonTX, USA; Sealy Center for Molecular Medicine, Institute for Translational Science, The University of Texas Medical Branch, GalvestonTX, USA.
Thomas A GreenCenter for Addiction Research, The University of Texas Medical Branch, GalvestonTX, USA; Department of Pharmacology and Toxicology, The University of Texas Medical Branch, GalvestonTX, USA; Mitchell Center for Neurodegenerative Diseases, The University of Texas Medical Branch, GalvestonTX, USA.

Funding

UTMB Clinical and Translational Science AwardUL1TR001439 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI URBAN, RANDALL J · 2015 to 2024
$40.0M
UTMB Clinical and Translational Science AwardUL1TR000071 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BRASIER, ALLAN R. · 2012 to 2014
$14.4M
Translational Explorations in Substance Use DisordersT32DA007287 · NIDA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI Kathryn A. Cunningham, Jonathan Dean Hommel · 1994 to 2026
$4.7M
Amygdala Serotonin Neurotransmission and Neuropathic PainR01NS081121 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GREEN, THOMAS ARTHUR, NEUGEBAUER, VOLKER · 2013 to 2017
$2.3M
Molecular Mechanisms of Environmental EnrichmentR01DA029091 · NIDA · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GREEN, THOMAS ARTHUR · 2011 to 2015
$1.8M
NCATS NIH HHS UL1 TR000071NCATS NIH HHS UL1 TR001439NIDA NIH HHS R01 DA029091NIDA NIH HHS T32 DA007287NINDS NIH HHS R01 NS081121
6 · The paper itself

Abstract

There exists much variability in susceptibility/resilience to addiction in humans. The environmental enrichment paradigm is a rat model of resilience to addiction-like behavior, and understanding the molecular mechanisms underlying this protective phenotype may lead to novel targets for pharmacotherapeutics to treat cocaine addiction. We investigated the differential regulation of transcript levels using RNA sequencing of the rat nucleus accumbens after environmental enrichment/isolation and cocaine/saline self-administration. Ingenuity Pathways Analysis and Gene Set Enrichment Analysis of 14,309 transcripts demonstrated that many biofunctions and pathways were differentially regulated. New functional pathways were also identified for cocaine modulation (e.g., Rho GTPase signaling) and environmental enrichment (e.g., signaling of EIF2, mTOR, ephrin). However, one novel pathway stood out above the others, the retinoic acid (RA) signaling pathway. The RA signaling pathway was identified as one likely mediator of the protective enrichment addiction phenotype, an interesting result given that nine RA signaling-related genes are expressed selectively and at high levels in the nucleus accumbens shell (NAcSh). Subsequent knockdown of

Indexed as

differential rearingdrug dependenceregionally enhanced gene expressionRNA-seqself-administrationstimulants

Identifiers

PMID27899881
PMCPMC5110542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.