Evidence map›Paper›PMID 27898393›Full record

ArticleGenes & development2016

A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis.

Sara Simonini, Joyita Deb, Laila Moubayidin, Pauline Stephenson, Manoj Valluru, Alejandra Freire-Rios, Karim Sorefan, Dolf Weijers, Jiří Friml, Lars Østergaard

Erratum issuedOpen access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 154 citations in OpenAlex.

  1. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
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  2. Mutational analyses of an instability domain reveal its conserved role in the regulation of class-B ARF levels inProceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Article
  4. VPS13 has an important role in female germline development in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
    Article
  5. Review
  6. Article
  7. Cytokinin-responsive P-type cyclins control Arabidopsis radial style morphology.The Plant journal : for cell and molecular biology · 2025
    Article
  8. Article
  9. Mechanisms of auxin action in plant growth and development.Nature reviews. Molecular cell biology · 2025
    Review
  10. Horticulture research · 2025
    Article
  11. Auxin Orchestrates Germ Cell Specification inInternational journal of molecular sciences · 2025
    Review
  12. Arabidopsis research in 2030: Translating the computable plant.The Plant journal : for cell and molecular biology · 2025
    Review
  13. Article
  14. Chromatin Immunoprecipitation for Standard, Rare, or Weakly Binding Proteins.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  15. Article
  16. Slow and rapid auxin responses in Arabidopsis.Journal of experimental botany · 2024
    Article
  17. Article
  18. Divergent Roles of the Auxin Response Factors in Lemongrass (International journal of molecular sciences · 2024
    Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sara SimoniniDepartment of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Joyita DebDepartment of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Laila MoubayidinDepartment of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Pauline StephensonDepartment of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Manoj ValluruDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom.
Alejandra Freire-RiosLaboratory of Biochemistry, Wageningen University, 6703 HA Wageningen, the Netherlands.
Karim SorefanDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom.
Dolf WeijersLaboratory of Biochemistry, Wageningen University, 6703 HA Wageningen, the Netherlands.
Jiří FrimlInstitute of Science and Technology (IST) Austria, 3400 Klosterneuburg, Austria.
Lars ØstergaardDepartment of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom.ORCID http://orcid.org/0000-0002-8497-7657
John Innes Centre · GBUniversity of Sheffield · GBWageningen University & Research · NLInstitute of Science and Technology Austria · AT

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/00000613
6 · The paper itself

Abstract

Tissue patterning in multicellular organisms is the output of precise spatio-temporal regulation of gene expression coupled with changes in hormone dynamics. In plants, the hormone auxin regulates growth and development at every stage of a plant's life cycle. Auxin signaling occurs through binding of the auxin molecule to a TIR1/AFB F-box ubiquitin ligase, allowing interaction with Aux/IAA transcriptional repressor proteins. These are subsequently ubiquitinated and degraded via the 26S proteasome, leading to derepression of auxin response factors (ARFs). How auxin is able to elicit such a diverse range of developmental responses through a single signaling module has not yet been resolved. Here we present an alternative auxin-sensing mechanism in which the ARF ARF3/ETTIN controls gene expression through interactions with process-specific transcription factors. This noncanonical hormone-sensing mechanism exhibits strong preference for the naturally occurring auxin indole 3-acetic acid (IAA) and is important for coordinating growth and patterning in diverse developmental contexts such as gynoecium morphogenesis, lateral root emergence, ovule development, and primary branch formation. Disrupting this IAA-sensing ability induces morphological aberrations with consequences for plant fitness. Therefore, our findings introduce a novel transcription factor-based mechanism of hormone perception in plants.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsF-Box ProteinsGene Expression Regulation, PlantIndoleacetic AcidsMorphogenesisNuclear ProteinsProtein BindingProtein Serine-Threonine KinasesReceptors, Cell SurfaceTranscription FactorsArabidopsis ProteinsDNA-Binding ProteinsETT protein, ArabidopsisF-Box ProteinsIndoleacetic AcidsNuclear ProteinsProtein Serine-Threonine KinasesReceptors, Cell SurfaceTIR1 protein, ArabidopsisTranscription FactorsArabidopsisauxin signalingETTINIAAplant developmenttranscription factor complex

Identifiers

PMID27898393
PMCPMC5110995
OpenAlexW2554261944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.