Evidence map›Paper›PMID 27897014›Full record

ArticlePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2017

THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE.

Lana X Garmire, Stephen Gliske, Quynh C Nguyen, Jonathan H Chen, Shamim Nemati, John D VAN Horn, Jason H Moore, Carol Shreffler, Michelle Dunn

Abstract read
In one paragraph

Article in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Democratizing data science through data science training.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lana X Garmire2Epidemiology Program, University of Hawaii Cancer Center,Honolulu, HI, 96813, USA†Work partially supported by grant NIH Big Data 2 Knowledge Award K01ES025434 (to LXG), K01ES026839 (to SG), K01ES025433 (to QCN), K01ES026837 (to JHC), K01ES025445 (to SN), U24 ES026465 (to JDV), by the National Institute of Environmental Health Sciences through funds provided by the trans-NIH Big Data to Knowledge (BD2K) initiative,*work is also partially supported by P20 COBRE GM103457 awarded by NIH/NIGMS, NICHD R01 HD084633, NLM R01 LM012373, and Hawaii Community Foundation Medical Research Grant 14ADVC-64566., LGarmire@Hawaii.edu.
Stephen Gliske
Quynh C Nguyen
Jonathan H Chen
Shamim Nemati
John D VAN Horn
Jason H Moore
Carol Shreffler
Michelle Dunn

Funding

Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MOISYADI, STEFAN · 2012 to 2018
$12.9M
Promoting Institutional Communities for Open Data ScienceU24ES026465 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VAN HORN, JOHN DARRELL · 2015 to 2017
$7.6M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Cancer precision medicine through spatially informative single cell image and transcriptomics data analysisR01LM012373 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2024
$2.4M
Deep Learning and Streaming Analytics for Prediction of Adverse Events in the ICUK01ES025445 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NEMATI, SHAMIM · 2015 to 2019
$951k
An Integrative Bioinformatics Approach to Study Single Cancer Cell HeterogeneityK01ES025434 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2014 to 2018
$905k
Data-Mining Clinical Decision Support from Electronic Health RecordsK01ES026837 · NIEHS · STANFORD UNIVERSITY · PI CHEN, JONATHAN H. · 2015 to 2019
$893k
HashtagHealth: A Social Media Big Data Resource for Neighborhood Effects ResearchK01ES025433 · NIEHS · UNIV OF MARYLAND, COLLEGE PARK · PI NGUYEN, QUYNH · 2014 to 2018
$816k
Epileptic biomarkers and big data: identifying brain regions to resect in patients with refractory epilepsyK01ES026839 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GLISKE, STEPHEN V · 2015 to 2019
$734k
NICHD NIH HHS R01 HD084633NIEHS NIH HHS K01 ES025433NIEHS NIH HHS K01 ES025434NIEHS NIH HHS K01 ES025445NIEHS NIH HHS K01 ES026837NIEHS NIH HHS K01 ES026839NIEHS NIH HHS U24 ES026465NIGMS NIH HHS P20 GM103457NLM NIH HHS R01 LM012373
6 · The paper itself

Abstract

With the booming of new technologies, biomedical science has transformed into digitalized, data intensive science. Massive amount of data need to be analyzed and interpreted, demand a complete pipeline to train next generation data scientists. To meet this need, the transinstitutional Big Data to Knowledge (BD2K) Initiative has been implemented since 2014, complementing other NIH institutional efforts. In this report, we give an overview the BD2K K01 mentored scientist career awards, which have demonstrated early success. We address the specific trainings needed in representative data science areas, in order to make the next generation of data scientists in biomedicine.

Indexed as

Computational BiologyHumansMedical InformaticsMentorsNational Institutes of Health (U.S.)Public HealthTraining SupportTranslational Research, BiomedicalUnited States

Identifiers

PMID27897014
PMCPMC5425257

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.