Evidence map›Paper›PMID 27895706›Full record

ArticleBiotechnology for biofuels2016

Whole-genome metabolic model of

Sandra Castillo, Dorothee Barth, Mikko Arvas, Tiina M Pakula, Esa Pitkänen, Peter Blomberg, Tuulikki Seppanen-Laakso, Heli Nygren, Dhinakaran Sivasiddarthan, Merja Penttilä and 1 more

Abstract read
In one paragraph

Article in Biotechnology for biofuels, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Environmental flexibility does not explain metabolic robustness.NPJ systems biology and applications · 2020
    Article
  8. Article
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sandra CastilloVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.ORCID 0000-0003-3568-787X
Dorothee BarthVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Mikko ArvasVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Tiina M PakulaVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Esa PitkänenDepartment of Computer Science, University of Helsinki, P.O. 68 (Gustaf Hällströmin katu 2b), 00014 Helsinki, Finland.
Peter BlombergVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Tuulikki Seppanen-LaaksoVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Heli NygrenVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Dhinakaran SivasiddarthanVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Merja PenttiläVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.
Merja OjaVTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 Espoo, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background

resultsA whole-genome metabolic model of

conclusionsThe improvements presented in this work on the CoReCo pipeline for metabolic model reconstruction resulted in higher-quality metabolic models compared with previous versions. A metabolic model of

Identifiers

PMID27895706
PMCPMC5117618

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.