Evidence map›Paper›PMID 27895046›Full record

ArticleBiology open2017

Gene silencing of Nox4 by CpG island methylation during hepatocarcinogenesis in rats.

Guadalupe S López-Álvarez, Tomasz K Wojdacz, Claudia M García-Cuellar, Hugo C Monroy-Ramírez, Miguel A Rodríguez-Segura, Ruth A Pacheco-Rivera, Carlos A Valencia-Antúnez, Nancy Cervantes-Anaya, Ernesto Soto-Reyes, Verónica R Vásquez-Garzón and 2 more

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Genetic deletion of Nox4 enhances cancerogen-induced formation of solid tumors.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Guadalupe S López-ÁlvarezDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Tomasz K WojdaczAarhus Institute of Advanced Studies and Department of Biomedicine, Bartholins Allé 6 Building, 1242, 8000 Aarhus C, Denmark.
Claudia M García-CuellarInstituto Nacional de Cancerología (INCan), Subdirección de Investigación Básica, San Fernando No. 22, Tlalpan, CDMX CP 14080, México.
Hugo C Monroy-RamírezDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Miguel A Rodríguez-SeguraDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Ruth A Pacheco-RiveraDepartamento de Bioquímica, Escuela Nacional de Ciencias Biológicas-IPN, Carpio y Plan de Ayala S/N, Col. Casco de Santo Tomas, CDMX CP 11340, México.
Carlos A Valencia-AntúnezDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Nancy Cervantes-AnayaDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México.
Ernesto Soto-ReyesInstituto Nacional de Cancerología (INCan), Subdirección de Investigación Básica, San Fernando No. 22, Tlalpan, CDMX CP 14080, México.
Verónica R Vásquez-GarzónCONACYT, Facultad de Medicina y Cirugía, Universidad Autónoma "Benito Juárez" de Oaxaca, Ex-Hacienda de Aguilera S/N Carretera a San Felipe del Agua, Oaxaca, Oax., CP 68020, México.
Yesennia Sánchez-PérezInstituto Nacional de Cancerología (INCan), Subdirección de Investigación Básica, San Fernando No. 22, Tlalpan, CDMX CP 14080, México yesennia.sanchez@salud.gob.mx svilla@cell.cinvestav.mx.
Saúl Villa-TreviñoDepartamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV), Av. IPN No. 2508 Col. San Pedro Zacatenco, CDMX CP 07360, México yesennia.sanchez@salud.gob.mx svilla@cell.cinvestav.mx.
Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional · MXAarhus University · DKBenito Juárez Autonomous University of Oaxaca · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The association between the downregulation of genes and DNA methylation in their CpG islands has been extensively studied as a mechanism that favors carcinogenesis. The objective of this study was to analyze the methylation of a set of genes selected based on their microarray expression profiles during the process of hepatocarcinogenesis. Rats were euthanized at: 24 h, 7, 11, 16 and 30 days and 5, 9, 12 and 18 months post-treatment. We evaluated the methylation status in the CpG islands of four deregulated genes (Casp3, Cldn1, Pex11a and Nox4) using methylation-sensitive high-resolution melting technology for the samples obtained from different stages of hepatocarcinogenesis. We did not observe methylation in Casp3, Cldn1 or Pex11a. However, Nox4 exhibited altered methylation patterns, reaching a maximum of 10%, even during the early stages of hepatocarcinogenesis. We observed downregulation of mRNA and protein of Nox4 (97.5% and 40%, respectively) after the first carcinogenic stimulus relative to the untreated samples. Our results suggest that Nox4 downregulation is associated with DNA methylation of the CpG island in its promoter. We propose that methylation is a mechanism that can silence the expression of Nox4, which could contribute to the acquisition of neoplastic characteristics during hepatocarcinogenesis in rats.

Indexed as

Casp3Chemical hepatocarcinogenesisCldn1DownregulationNox4, DNA methylationPex11a

Identifiers

PMID27895046
PMCPMC5278421
OpenAlexW2557451834

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.