Evidence map›Paper›PMID 27895018›Full record

ArticleAntimicrobial agents and chemotherapy2017

Occurrence of Diverse AbGRI1-Type Genomic Islands in Acinetobacter baumannii Global Clone 2 Isolates from South Korea.

Dae Hun Kim, Sook-In Jung, Ki Tae Kwon, Kwan Soo Ko

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

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  6. The Changes in Epidemiology of Imipenem-ResistantJournal of Korean medical science · 2022
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  9. Molecular Characterization of Carbapenem-ResistantInfection and drug resistance · 2022
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  11. Co-Occurrence ofAntibiotics (Basel, Switzerland) · 2021
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  15. Review
  16. Genomic Analysis of ConsecutiveFrontiers in microbiology · 2018
    Article
  17. Surface-Related Features and Virulence AmongFrontiers in microbiology · 2018
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  18. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Dae Hun KimDepartment of Molecular Cell Biology, Sungkyunkwan University School of Medicine, Suwon, South Korea.
Sook-In JungDepartment of Infectious Diseases, Chonnam National University Medical School, Gwangju, South Korea.
Ki Tae KwonDivision of Infectious Diseases, Daegu Fatima Hospital, Daegu, South Korea.
Kwan Soo KoDepartment of Molecular Cell Biology, Sungkyunkwan University School of Medicine, Suwon, South Korea ksko@skku.edu.
Sungkyunkwan University · KRChonnam National University Hospital · KRDaegu Fatima Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we analyzed the frequency of the AbGRI1-type genomic island (GI) and its association with genotypes. We obtained 130 Acinetobacter baumannii isolates causing bloodstream infections from patients in South Korea. Antimicrobial susceptibility testing and multilocus sequence typing were performed. The presence of AbGRI1-type GIs and their structures were determined by sequential PCR and sequencing. Ninety-eight isolates (75.3%) representing 14 sequence types (STs) belonged to clonal complex 208 (CC208), corresponding to global clone 2 (GC2). AbGRI1-type GIs interrupted the comM gene in 107 isolates (82.4%). Four types of GIs were identified: Tn6022 (50 isolates; 46.7%), AbaR4 (23 isolates; 21.5%), Tn6166 (10 isolates; 9.3%), and Tn6166/Tn2006 (24 isolates; 22.4%). In the 50 isolates with Tn6022, Tn2006 or Tn2008B, both containing ISAba1-bla

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAnti-Bacterial Agentsbeta-LactamasesCarbapenemsDNA Transposable ElementsGenomic IslandsGenotypeHumansMicrobial Sensitivity TestsMultilocus Sequence TypingRepublic of KoreaAnti-Bacterial Agentsbeta-LactamasesCarbapenemsDNA Transposable ElementsAbaR4blaOXA-23carbapenem resistanceresistance islandTn6022Tn6166

Identifiers

PMID27895018
PMCPMC5278748
OpenAlexW2557301758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.