Evidence map›Paper›PMID 27893856›Full record

ArticlePloS one2016

Spatial Distribution of Selected Chemical Cell Wall Components in the Embryogenic Callus of Brachypodium distachyon.

Alexander Betekhtin, Magdalena Rojek, Anna Milewska-Hendel, Robert Gawecki, Jagna Karcz, Ewa Kurczynska, Robert Hasterok

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
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  5. Article
  6. 3,4-Dehydro-L-proline Induces Programmed Cell Death in the Roots ofInternational journal of molecular sciences · 2021
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  9. Article
  10. Review
  11. Article
  12. In Vitro Tissue Culture inInternational journal of molecular sciences · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Cell Wall Epitopes and Endoploidy as Reporters of Embryogenic Potential inInternational journal of molecular sciences · 2018
    Article
  17. 5-Azacitidine Induces Cell Death in a Tissue Culture ofInternational journal of molecular sciences · 2018
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alexander BetekhtinDepartment of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.ORCID http://orcid.org/0000-0001-6146-1669
Magdalena RojekDepartment of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
Anna Milewska-HendelDepartment of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
Robert GaweckiDepartment of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
Jagna KarczScanning Electron Microscopy Laboratory, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
Ewa KurczynskaDepartment of Cell Biology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
Robert HasterokDepartment of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.
University of Silesia in Katowice · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brachypodium distachyon L. Beauv. (Brachypodium) is a species that has become an excellent model system for gaining a better understanding of various areas of grass biology and improving plant breeding. Although there are some studies of an in vitro Brachypodium culture including somatic embryogenesis, detailed knowledge of the composition of the main cell wall components in the embryogenic callus in this species is missing. Therefore, using the immunocytochemical approach, we targeted 17 different antigens of which five were against the arabinogalactan proteins (AGP), three were against extensins, six recognised pectic epitopes and two recognised hemicelluloses. These studies were complemented by histological and scanning electron microscopy (SEM) analyses. We revealed that the characteristic cell wall components of Brachypodium embryogenic calli are AGP epitopes that are recognised by the JIM16 and LM2 antibodies, an extensin epitope that is recognised by the JIM11 antibody and a pectic epitopes that is recognised by the LM6 antibody. Furthermore, we demonstrated that AGPs and pectins are the components of the extracellular matrix network in Brachypodium embryogenic culture. Additionally, SEM analysis demonstrated the presence of an extracellular matrix on the surface of the calli cells. In conclusion, the chemical compositions of the cell walls and ECMSN of Brachypodium callus show spatial differences that correlate with the embryogenic character of the cells. Thus, the distribution of pectins, AGPs and hemicelluloses can be used as molecular markers of embryogenic cells. The presented data extends the knowledge about the chemical composition of the embryogenic callus cells of Brachypodium.

Indexed as

Plant Somatic Embryogenesis TechniquesBrachypodiumCallositiesCell WallMicroscopy, Electron, ScanningMucoproteinsPectinsPlant Proteinsarabinogalactan proteinsMucoproteinsPectinsPlant Proteins

Identifiers

PMID27893856
PMCPMC5125709
OpenAlexW2558312197

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.