Evidence map›Paper›PMID 27891181›Full record

ArticleGut pathogens2016

Whole-genome sequencing and comparative genomic analysis of

Taesoo Kwon, Young-Seok Bak, Young-Hee Jung, Young-Bin Yu, Jong Tae Choi, Cheorl-Ho Kim, Jung-Beom Kim, Won Kim, Seung-Hak Cho

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Gut pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Construction of a Lectin-Glycan Interaction Network from EnterohemorrhagicInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Taesoo Kwon *Interdisciplinary Program in Bioinformatics, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 151-742 Republic of Korea.
Young-Seok Bak *Department of Emergency Medical Service, Sun Moon University, Asan-si, Chungcheongnam-do, 31460 Republic of Korea.
Young-Hee JungDivision of Antimicrobial Resistance, Center for Infectious Diseases, Korea National Institute of Health, Cheongju, 363-951 Republic of Korea.
Young-Bin YuDepartment of Biomedical Laboratory Science, College of Medical Science, Konyang University, Daejeon, 302-832 Republic of Korea.
Jong Tae ChoiDepartment of Biomedical Laboratory Science, Kyungdong University, 815 Gyeonhwon-ro, Munmak-eup, Wonju-si, Gangwon-do 26495 Republic of Korea.
Cheorl-Ho KimGlycobiology Unit, Department of Biological Science, Sungkyunkwan University and Samsung Advanced Institute for Health Sciences and Technology (SAIHST), 2066 Seobu-ro, Suwon, 16419 Republic of Korea.
Jung-Beom KimDepartment of Food Science and Technology, Sunchon National University, Sunchon, Jeonnam 540-950 Republic of Korea.
Won Kim *Interdisciplinary Program in Bioinformatics, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 151-742 Republic of Korea.
Seung-Hak Cho *Division of Enteric Diseases, Center for Infectious Diseases, Korea National Institute of Health, Cheongju, 363-951 Republic of Korea.ORCID 0000-0002-1005-4470

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Shiga toxin-producing

resultsUsing the Illumina HiSeq 2000 platform and Rapid Annotation using the Subsystem Technology (RAST) server, whole-genome sequences of NCCP15736 and NCCP15737 were obtained and annotated. Phylogenetic analysis of ten

conclusionsNCCP15736 and NCCP15737 differ at the genomic level, even though they share features such as virulence-related genes. NCCP15737 has a deletion in

Indexed as

Draft genomefimDShiga-like toxin-producing Escherichia coli O91Truncated proteinType I fimbriae

Identifiers

PMID27891181
PMCPMC5106847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.