ArticlePlant biotechnology journal2017
Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.
Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Genomic Footprints of Historical Introgression Between Ancient Lineages of Wild Oryza AA-Genome Species With Widely Separated Contemporary Distributions.Genome biology and evolution · 2026Article
- Natural variation of indels in the CTB3 promoter confers cold tolerance in japonica rice.Nature communications · 2025Article
- The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication.BMC genomics · 2025Article
- Seed abortion caused by the combination of two duplicate genes in the progeny from the cross betweenBreeding science · 2024Article
- Insights into the Transcriptomics of Crop Wild Relatives to Unravel the Salinity Stress Adaptive Mechanisms.International journal of molecular sciences · 2023Review
- Unveiling the Mysteries of Non-Mendelian Heredity in Plant Breeding.Plants (Basel, Switzerland) · 2023Review
- Resequencing of Rosa rugosa accessions revealed the history of population dynamics, breed origin, and domestication pathways.BMC plant biology · 2023Article
- Phylogenetic analysis of endogenous viral elements in the rice genome reveals local chromosomal evolution inFrontiers in plant science · 2023Article
- Supporting in situ conservation of the genetic diversity of crop wild relatives using genomic technologies.Molecular ecology · 2022Review
- Starch Molecular Structural Features and Volatile Compounds Affecting the Sensory Properties of Polished Australian Wild Rice.Foods (Basel, Switzerland) · 2022Article
- Intraspecific Variation for Leaf Physiological and Root Morphological Adaptation to Drought Stress in Alfalfa (Frontiers in plant science · 2022Article
- Potential of Genome Editing to Capture Diversity From Australian Wild Rice Relatives.Frontiers in genome editing · 2022Review
- Reticulate Evolution in AA-Genome Wild Rice in Australia.Frontiers in plant science · 2022Article
- Genomic resources in plant breeding for sustainable agriculture.Journal of plant physiology · 2021Review
- Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production.BMC plant biology · 2020Article
- Current status of genomic resources on wild relatives of rice.Breeding science · 2020Article
- Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels.Genome biology and evolution · 2020Article
- Molecular and Morphological Divergence of Australian Wild Rice.Plants (Basel, Switzerland) · 2020Article
- Relationships between Iraqi Rice Varieties at the Nuclear and Plastid Genome Levels.Plants (Basel, Switzerland) · 2019Article
- Segregation Distortion Observed in the Progeny of Crosses BetweenPlants (Basel, Switzerland) · 2019Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The related A genome species of the Oryza genus are the effective gene pool for rice. Here, we report draft genomes for two Australian wild A genome taxa: O. rufipogon-like population, referred to as Taxon A, and O. meridionalis-like population, referred to as Taxon B. These two taxa were sequenced and assembled by integration of short- and long-read next-generation sequencing (NGS) data to create a genomic platform for a wider rice gene pool. Here, we report that, despite the distinct chloroplast genome, the nuclear genome of the Australian Taxon A has a sequence that is much closer to that of domesticated rice (O. sativa) than to the other Australian wild populations. Analysis of 4643 genes in the A genome clade showed that the Australian annual, O. meridionalis, and related perennial taxa have the most divergent (around 3 million years) genome sequences relative to domesticated rice. A test for admixture showed possible introgression into the Australian Taxon A (diverged around 1.6 million years ago) especially from the wild indica/O. nivara clade in Asia. These results demonstrate that northern Australia may be the centre of diversity of the A genome Oryza and suggest the possibility that this might also be the centre of origin of this group and represent an important resource for rice improvement.
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