Evidence map›Paper›PMID 27889451›Full record

ArticleMolecular cell2016

Diet-Microbiota Interactions Mediate Global Epigenetic Programming in Multiple Host Tissues.

Kimberly A Krautkramer, Julia H Kreznar, Kymberleigh A Romano, Eugenio I Vivas, Gregory A Barrett-Wilt, Mary E Rabaglia, Mark P Keller, Alan D Attie, Federico E Rey, John M Denu

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06386081 (Dietary Intervention in Food Allergy), which is not on this map. Cited by 344 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
344citing papers in PubMed, 3 pooled it
23.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06386081 nacompletednot on this mapstarted 2021, after this paper: background citation

Dietary Intervention in Food Allergy: Microbiome, Epigenetic and Metabolomic Interactions

TypeinterventionalSponsorFundación Pública Andaluza para la Investigación de Málaga en Biomedicina y SaludRan2021 to 2023Enrolled51ConditionsFood AllergyArmsCitrus pectin with low DE, Apple pectin with high DE, Placebo
3 · Its place in the literature

Who cites it

344 citing papers in PubMed, 3 syntheses or guidelines pooled it, 585 citations in OpenAlex.

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284 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Kimberly A KrautkramerWisconsin Institute for Discovery, Madison, WI 53715, USA; Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health - Madison, Madison, WI 53706, USA.
Julia H KreznarDepartment of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA.
Kymberleigh A RomanoDepartment of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA.
Eugenio I VivasDepartment of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA.
Gregory A Barrett-WiltBiotechnology Center, University of Wisconsin - Madison, Madison, WI 53706, USA.
Mary E RabagliaDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, USA.
Mark P KellerDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, USA.
Alan D AttieDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, USA.
Federico E ReyDepartment of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA. Electronic address: ferey@wisc.edu.
John M DenuWisconsin Institute for Discovery, Madison, WI 53715, USA; Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health - Madison, Madison, WI 53706, USA; Morgridge Institute for Research, Madison, WI 53715, USA. Electronic address: john.denu@wisc.edu.
University of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Institutional Clinical and Translational Science AwardKL2TR000428 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$6.2M
The Diversity Outbred Diabetes ProjectR01DK101573 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Alan D Attie · 2014 to 2026
$5.3M
Molecular mechanisms of histone modification - Alzheimer’s supplement NOT-AG-18-008R37GM059785 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2013 to 2022
$3.7M
Molecular Mechanisms of Histone AcetyltransferasesR01GM059785 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 1999 to 2012
$2.9M
Collaborative Cross of the Microbiome and Metabolic DiseaseR01DK108259 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI REY, FEDERICO E · 2015 to 2019
$2.1M
Interactions between gut microbial metabolism and host epigenomeF30DK108494 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI KRAUTKRAMER, KIMBERLY ANN · 2016 to 2018
$93k
NCATS NIH HHS KL2 TR000428NCATS NIH HHS UL1 TR000427NIDDK NIH HHS F30 DK108494NIDDK NIH HHS R01 DK101573NIDDK NIH HHS R01 DK108259NIDDK NIH HHS T32 DK007665NIGMS NIH HHS R01 GM059785NIGMS NIH HHS R37 GM059785NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Histone-modifying enzymes regulate transcription and are sensitive to availability of endogenous small-molecule metabolites, allowing chromatin to respond to changes in environment. The gut microbiota produces a myriad of metabolites that affect host physiology and susceptibility to disease; however, the underlying molecular events remain largely unknown. Here we demonstrate that microbial colonization regulates global histone acetylation and methylation in multiple host tissues in a diet-dependent manner: consumption of a "Western-type" diet prevents many of the microbiota-dependent chromatin changes that occur in a polysaccharide-rich diet. Finally, we demonstrate that supplementation of germ-free mice with short-chain fatty acids, major products of gut bacterial fermentation, is sufficient to recapitulate chromatin modification states and transcriptional responses associated with colonization. These findings have profound implications for understanding the complex functional interactions between diet, gut microbiota, and host health.

Indexed as

Diet, WesternEpigenesis, GeneticAdipose TissueAnimalsColonDNA MethylationFatty Acids, VolatileGastrointestinal MicrobiomeHistonesLiverMaleMiceMice, Inbred C57BLOrgan SpecificityFatty Acids, VolatileHistonesepigeneticgut microbiotahistone acetylationhistone methylationhistone proteomicshistone PTMmicrobiomeSCFAshort-chain fatty acid

Identifiers

PMID27889451
PMCPMC5227652
OpenAlexW2553615018

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.