Evidence map›Paper›PMID 27889208›Full record

ArticleStructure (London, England : 1993)2017

The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook.

Frédéric V Stanger, Tjaart A P de Beer, David M Dranow, Tilman Schirmer, Isabelle Phan, Christoph Dehio

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Translocation of YopJ family effector proteins through the VirB/VirD4 T4SS ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Structural basis for effector recognition by an antibacterial type IV secretion system.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Review
  8. The Impact ofFrontiers in microbiology · 2021
    Review
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Frédéric V StangerFocal Area Infection Biology, Biozentrum University of Basel, 4056 Basel, Switzerland; Focal Area Structural Biology and Biophysics, Biozentrum University of Basel, 4056 Basel, Switzerland.
Tjaart A P de BeerFocal Area Infection Biology, Biozentrum University of Basel, 4056 Basel, Switzerland.
David M DranowSeattle Structural Genomics Center for Infectious Disease, The Center for Infectious Disease Research, Seattle, WA 98109, USA; Beryllium Discovery Corp., Bainbridge Island, WA 98110, USA.
Tilman SchirmerFocal Area Structural Biology and Biophysics, Biozentrum University of Basel, 4056 Basel, Switzerland. Electronic address: tilman.schirmer@unibas.ch.
Isabelle PhanSeattle Structural Genomics Center for Infectious Disease, The Center for Infectious Disease Research, Seattle, WA 98109, USA.
Christoph DehioFocal Area Infection Biology, Biozentrum University of Basel, 4056 Basel, Switzerland. Electronic address: christoph.dehio@unibas.ch.
University of Basel · CHBeryllium (United States) · USCenter for Infectious Disease Research · US

Funding

NIAID NIH HHS HHSN272200700057CNIAID NIH HHS HHSN272201200025C
6 · The paper itself

Abstract

The BID (Bep intracellular delivery) domain functions as secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Bartonella effector proteins (Beps) during protein transfer into host cells infected by pathogenic Bartonella species. Furthermore, BID domains of Beps have often evolved secondary effector functions within host cells. Here, we provide crystal structures for three representative BID domains and describe a novel conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook. The conserved hydrophobic core provides a rigid scaffold to a surface that, despite a few conserved exposed residues and similarities in charge distribution, displays significant variability. We propose that the genuine function of BID domains as T4S signal may primarily depend on their rigid structure, while the plasticity of their surface may facilitate adaptation to secondary effector functions.

Indexed as

BartonellaBinding SitesConserved SequenceCrystallography, X-RayModels, MolecularProtein DomainsProtein Structure, SecondaryType VI Secretion SystemsType VI Secretion Systemsbacterial conjugationBartonella effector proteins (Beps)BID domainfour-helix bundlenovel foldrelaxasessecretion signalsecretion systemtype IV secretion system (T4SS)

Identifiers

PMID27889208
PMCPMC6121808
OpenAlexW2553282380

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.