Evidence map›Paper›PMID 27882772›Full record

ArticleEpigenomics2016

miRNAs differentially expressed by next-generation sequencing in cord blood buffy coat samples of boys and girls.

Daneida Lizarraga, Karen Huen, Mary Combs, Maria Escudero-Fung, Brenda Eskenazi, Nina Holland

Open access · greenAbstract read
In one paragraph

Article in Epigenomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
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  4. Human pancreatic islet microRNAs implicated in diabetes and related traits by large-scale genetic analysis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
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  9. Article
  10. Age-Related Differences in miRNA Expression in Mexican-American Newborns and Children.International journal of environmental research and public health · 2019
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daneida LizarragaSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
Karen HuenSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
Mary CombsSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
Maria Escudero-FungSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
Brenda EskenaziSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
Nina HollandSchool of Public Health, Center for Environmental Research on Children's Health (CERCH), University of California, Berkeley, CA 94720, USA.
University of California, Berkeley · USCenter for Environmental Health · US

Funding

Project C: Epigenetic Effects of DDT/E and PBDEs on PubertyP01ES009605 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ESKENAZI, BRENDA · 1999 to 2015
$11.2M
Molecular Mechanisms of Obesity in Children Exposed to Phthalates in UteroR01ES021369 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HOLLAND, NINA T · 2013 to 2017
$3.1M
PON Epigenetics and Neurodevelopment in ChildrenR01ES023067 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HOLLAND, NINA T · 2014 to 2017
$1.3M
NIEHS NIH HHS P01 ES009605NIEHS NIH HHS R01 ES021369NIEHS NIH HHS R01 ES023067
6 · The paper itself

Abstract

aimDifferences in children's development and susceptibility to diseases and exposures have been observed by sex, yet human studies of sex differences in miRNAs are limited. MATERIALS &

methodsThe genome-wide miRNA expression was characterized by sequencing-based EdgeSeq assay in cord blood buffy coats from 89 newborns, and 564 miRNAs were further analyzed.

resultsDifferential expression of most miRNAs was higher in boys. Neurodevelopment, RNA metabolism and metabolic ontology terms were enriched among miRNA targets. The majority of upregulated miRNAs (86%) validated by nCounter maintained positive-fold change values; however, only 21% reached statistical significance by false discovery rate.

conclusionAccounting for host factors like sex may improve the sensitivity of epigenetic analyses for epidemiological studies in early childhood.

Indexed as

Blood Buffy CoatFemaleFetal BloodHumansInfant, NewbornMaleMicroRNAsSequence Analysis, RNASex FactorsMicroRNAscord bloodearly lifeepigeneticsfilteringmiRNAmiRNAomenewbornsnext-generation sequencingnormalization proceduressex differences

Identifiers

PMID27882772
PMCPMC5289041
OpenAlexW2556234235

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.