Evidence map›Paper›PMID 27881738›Full record

ArticleOpen biology2016

Human selenoprotein P and S variant mRNAs with different numbers of SECIS elements and inferences from mutant mice of the roles of multiple SECIS elements.

Sen Wu, Marco Mariotti, Didac Santesmasses, Kristina E Hill, Janinah Baclaocos, Estel Aparicio-Prat, Shuping Li, John Mackrill, Yuanyuan Wu, Michael T Howard and 4 more

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Selenoproteins and the senescence-associated epitranscriptome.Experimental biology and medicine (Maywood, N.J.) · 2022
    Review
  3. Selenoprotein S: A versatile disordered protein.Archives of biochemistry and biophysics · 2022
    Review
  4. Ribosome Fate during Decoding of UGA-Sec Codons.International journal of molecular sciences · 2021
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Molecular mechanism of selenoprotein P synthesis.Biochimica et biophysica acta. General subjects · 2018
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Sen WuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, People's Republic of China.
Marco MariottiCenter for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Didac SantesmassesCenter for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Kristina E HillDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Janinah BaclaocosDepartment of Biochemistry, University College Cork, Cork, Republic of Ireland.
Estel Aparicio-PratCenter for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Shuping LiState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, People's Republic of China.
John MackrillDepartment of Physiology, University College Cork, Cork, Republic of Ireland.
Yuanyuan WuDepartment of Human Genetics, University of Utah, Salt Lake City, UT 8412-5330, USA.
Michael T HowardDepartment of Human Genetics, University of Utah, Salt Lake City, UT 8412-5330, USA.
Mario CapecchiDepartment of Human Genetics, University of Utah, Salt Lake City, UT 8412-5330, USA.
Roderic GuigóCenter for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Raymond F BurkDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
John F AtkinsDepartment of Biochemistry, University College Cork, Cork, Republic of Ireland j.atkins@ucc.ie.ORCID 0000-0001-7933-0165
Universitat Pompeu Fabra · ESUniversity of Utah · USChina Agricultural University · CNUniversity College Cork · IEVanderbilt University · US

Funding

Nutritional and Metabolic Significance of SeleniumR37ES002497 · NIEHS · VANDERBILT UNIVERSITY · PI BURK, RAYMOND F. · 2004 to 2013
$4.7M
The effects of dietary selenium on translational control of protein synthesisR01GM114291 · NIGMS · UNIVERSITY OF UTAH · PI HOWARD, MICHAEL T · 2015 to 2022
$2.4M
Translational control of selenoprotein synthesisR21ES022716 · NIEHS · UNIVERSITY OF UTAH · PI HOWARD, MICHAEL T · 2013 to 2014
$408k
Howard Hughes Medical InstituteNIEHS NIH HHS R21 ES022716NIEHS NIH HHS R37 ES002497NIGMS NIH HHS R01 GM114291
6 · The paper itself

Abstract

Dynamic redefinition of the 10 UGAs in human and mouse selenoprotein P (Sepp1) mRNAs to specify selenocysteine instead of termination involves two 3' UTR structural elements (SECIS) and is regulated by selenium availability. In addition to the previously known human Sepp1 mRNA poly(A) addition site just 3' of SECIS 2, two further sites were identified with one resulting in 10-25% of the mRNA lacking SECIS 2. To address function, mutant mice were generated with either SECIS 1 or SECIS 2 deleted or with the first UGA substituted with a serine codon. They were fed on either high or selenium-deficient diets. The mutants had very different effects on the proportions of shorter and longer product Sepp1 protein isoforms isolated from plasma, and on viability. Spatially and functionally distinctive effects of the two SECIS elements on UGA decoding were inferred. We also bioinformatically identify two selenoprotein S mRNAs with different 5' sequences predicted to yield products with different N-termini. These results provide insights into SECIS function and mRNA processing in selenoprotein isoform diversity.

Indexed as

Mutation3' Untranslated RegionsAlternative SplicingAnimalsCodon, TerminatorHep G2 CellsHumansMiceProtein IsoformsRNA, MessengerSeleniumSelenocysteineSelenoprotein P3' Untranslated RegionsCodon, TerminatorProtein IsoformsRNA, MessengerSeleniumSelenocysteineSELENOP protein, humanSelenoprotein Pcodon redefinitionribosome specializationselenocysteineselenoprotein Pselenoprotein S

Identifiers

PMID27881738
PMCPMC5133445
OpenAlexW2549243830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.