Evidence map›Paper›PMID 27881553›Full record

ArticlemBio2016

Stage-Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont.

Sasisekhar Bennuru, James A Cotton, Jose M C Ribeiro, Alexandra Grote, Bhavana Harsha, Nancy Holroyd, Amruta Mhashilkar, Douglas M Molina, Arlo Z Randall, Adam D Shandling and 5 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Sasisekhar BennuruLaboratory of Parasitic Diseases, NIAID, NIH, Bethesda, Maryland, USA.
James A CottonWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Jose M C RibeiroLaboratory of Malaria and Vector Research, NIAID, NIH, Rockville, Maryland, USA.
Alexandra GroteDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York, USA.
Bhavana HarshaWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Nancy HolroydWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Amruta MhashilkarUniversity of South Florida, Tampa, Florida, USA.
Douglas M MolinaAntigen Discovery Inc., Irvine, California, USA.
Arlo Z RandallAntigen Discovery Inc., Irvine, California, USA.
Adam D ShandlingAntigen Discovery Inc., Irvine, California, USA.
Thomas R UnnaschUniversity of South Florida, Tampa, Florida, USA.
Elodie GhedinDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York, USA.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Sara LustigmanNew York Blood Center, New York, New York, USA slustigman@nybloodcenter.org tnutman@niaid.nih.gov.
Thomas B NutmanLaboratory of Parasitic Diseases, NIAID, NIH, Bethesda, Maryland, USA slustigman@nybloodcenter.org tnutman@niaid.nih.gov.
Wellcome Sanger Institute · GBAntigen Discovery (United States) · USNational Institute of Allergy and Infectious Diseases · USNew York University · USUniversity of South Florida · USNew York Blood Center · USVector Oncology (United States) · US

Funding

Vector-Borne Diseases: Biology Of Vector Host RelationshipZIAAI000810 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RIBEIRO, JOSE · 2009 to 2025
$20.8M
Molecular Definition Of Filarial And Related Nonfilarial Genes And ProteinsZIAAI000512 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NUTMAN, THOMAS · 2009 to 2025
$9.9M
INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
International Registry of Werner SyndromeR24AG042328 · NIA · UNIVERSITY OF WASHINGTON · PI MARTIN, GEORGE M., OSHIMA, JUNKO · 2012 to 2015
$743k
Metabolic network reconstruction in Filaria-Wolbachia symbiosisR21AI126466 · NIAID · NEW YORK UNIVERSITY · PI GHEDIN, ELODIE, PARKINSON, JOHN · 2016 to 2017
$377k
NIAID NIH HHS R21 AI126466NIAID NIH HHS T32 AI007180NIAID NIH HHS ZIA AI000512NIA NIH HHS R24 AG042328Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

Onchocerciasis (river blindness) is a neglected tropical disease that has been successfully targeted by mass drug treatment programs in the Americas and small parts of Africa. Achieving the long-term goal of elimination of onchocerciasis, however, requires additional tools, including drugs, vaccines, and biomarkers of infection. Here, we describe the transcriptome and proteome profiles of the major vector and the human host stages (L1, L2, L3, molting L3, L4, adult male, and adult female) of Onchocerca volvulus along with the proteome of each parasitic stage and of its Wolbachia endosymbiont (wOv). In so doing, we have identified stage-specific pathways important to the parasite's adaptation to its human host during its early development. Further, we generated a protein array that, when screened with well-characterized human samples, identified novel diagnostic biomarkers of O. volvulus infection and new potential vaccine candidates. This immunomic approach not only demonstrates the power of this postgenomic discovery platform but also provides additional tools for onchocerciasis control programs. IMPORTANCE: The global onchocerciasis (river blindness) elimination program will have to rely on the development of new tools (drugs, vaccines, biomarkers) to achieve its goals by 2025. As an adjunct to the completed genomic sequencing of O. volvulus, we used a comprehensive proteomic and transcriptomic profiling strategy to gain a comprehensive understanding of both the vector-derived and human host-derived parasite stages. In so doing, we have identified proteins and pathways that enable novel drug targeting studies and the discovery of novel vaccine candidates, as well as useful biomarkers of active infection.

Indexed as

ProteomeSymbiosisTranscriptomeAnimalsOnchocerca volvulusWolbachiaProteome

Identifiers

PMID27881553
PMCPMC5137501
OpenAlexW2551958950

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.