Evidence map›Paper›PMID 27881538›Full record

ArticleGenome announcements2016

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm.

Hannah L Woo, Kaela B O'Dell, Sagar Utturkar, Kathryn R McBride, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova and 11 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Hannah L WooDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA.
Kaela B O'DellDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.
Sagar UtturkarGraduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.
Kathryn R McBrideDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Alicia ClumDOE Joint Genome Institute, Walnut Creek, California, USA.
Manoj PillayDOE Joint Genome Institute, Walnut Creek, California, USA.
Krishnaveni PalaniappanDOE Joint Genome Institute, Walnut Creek, California, USA.
Neha VargheseDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia MikhailovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Dimitrios StamatisDOE Joint Genome Institute, Walnut Creek, California, USA.
T B K ReddyDOE Joint Genome Institute, Walnut Creek, California, USA.
Chew Yee NganDOE Joint Genome Institute, Walnut Creek, California, USA.
Chris DaumDOE Joint Genome Institute, Walnut Creek, California, USA.
Nicole ShapiroDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Steven D BrownGraduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.
Terry C HazenDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA tchazen@utk.edu.ORCID http://orcid.org/0000-0002-2536-9993

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thalassospira sp. strain KO164 was isolated from eastern Mediterranean seawater and sediment laboratory microcosms enriched on insoluble organosolv lignin under oxic conditions. The near-complete genome sequence presented here will facilitate analyses into this deep-ocean bacterium's ability to degrade recalcitrant organics such as lignin.

Identifiers

PMID27881538
PMCPMC5122680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.