Evidence map›Paper›PMID 27881476›Full record

ArticleRNA (New York, N.Y.)2017

Lin28a uses distinct mechanisms of binding to RNA and affects miRNA levels positively and negatively.

Jakub Stanislaw Nowak, Fruzsina Hobor, Angela Downie Ruiz Velasco, Nila Roy Choudhury, Gregory Heikel, Alastair Kerr, Andres Ramos, Gracjan Michlewski

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. A shape-shifting nuclease unravels structured RNA.Nature structural & molecular biology · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. miRNAmotif-A Tool for the Prediction of Pre-miRNA⁻Protein Interactions.International journal of molecular sciences · 2018
    Article
  18. Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  19. Article
  20. Loss ofGenes & development · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jakub Stanislaw NowakWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Fruzsina HoborInstitute of Structural and Molecular Biology, University College London, London, WC1E 6XA, United Kingdom.
Angela Downie Ruiz VelascoWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Nila Roy ChoudhuryWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Gregory HeikelWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Alastair KerrWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Andres RamosInstitute of Structural and Molecular Biology, University College London, London, WC1E 6XA, United Kingdom.
Gracjan MichlewskiWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
Wellcome Centre for Cell Biology · GBInstitute of Structural and Molecular Biology · GB

Funding

Medical Research Council MC_PC_13051Medical Research Council MC_U117574558Medical Research Council U117574558Wellcome TrustWellcome Trust 077707Wellcome Trust 091020Wellcome Trust 092076Wellcome Trust 096996Wellcome Trust 105246
6 · The paper itself

Abstract

Lin28a inhibits the biogenesis of let-7 miRNAs by triggering the polyuridylation and degradation of their precursors by terminal uridylyltransferases TUT4/7 and 3'-5' exoribonuclease Dis3l2, respectively. Previously, we showed that Lin28a also controls the production of neuro-specific miRNA-9 via a polyuridylation-independent mechanism. Here we reveal that the sequences and structural characteristics of pre-let-7 and pre-miRNA-9 are eliciting two distinct modes of binding to Lin28a. We present evidence that Dis3l2 controls miRNA-9 production. Finally, we show that the constitutive expression of untagged Lin28a during neuronal differentiation in vitro positively and negatively affects numerous other miRNAs. Our findings shed light on the role of Lin28a in differentiating cells and on the ways in which one RNA-binding protein can perform multiple roles in the regulation of RNA processing.

Indexed as

AnimalsBase PairingBase SequenceCell DifferentiationCell Line, TumorDNA-Binding ProteinsExoribonucleasesGene Expression RegulationGreen Fluorescent ProteinsHeLa CellsHumansMiceMicroRNAsNeuronsNucleic Acid ConformationPluripotent Stem CellsDIS3L2 protein, humanDNA-Binding ProteinsExoribonucleasesGreen Fluorescent ProteinsLIN28B protein, humanMicroRNAsMIRN92 microRNA, humanmirnlet7 microRNA, humanPoly URecombinant Fusion ProteinsRNA-Binding ProteinsRNA NucleotidyltransferasesRNA PrecursorsTretinoinTUT4 protein, humanTUT7 protein, humanlet-7Lin28amiRNA-9neuronal differentiation

Identifiers

PMID27881476
PMCPMC5311490
OpenAlexW2552543114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.