Evidence map›Paper›PMID 27880794›Full record

ArticlePloS one2016

Phylogeography of Crimean Congo Hemorrhagic Fever Virus.

Alexander N Lukashev, Alexander S Klimentov, Svetlana E Smirnova, Tamara K Dzagurova, Jan Felix Drexler, Anatoly P Gmyl

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Alexander N LukashevChumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Russia.ORCID http://orcid.org/0000-0001-7365-0352
Alexander S KlimentovChumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Russia.
Svetlana E SmirnovaChumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Russia.
Tamara K DzagurovaChumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Russia.
Jan Felix DrexlerInstitute of Virology, University of Bonn Medical Centre, Bonn, Germany.
Anatoly P GmylChumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Russia.
Chumakov Institute of Poliomyelitis and Viral Encephalitides · RUD.I. Ivanovsky Institute of Virology Russian Academy of Medical Sciences · RUPeoples' Friendship University of Russia · RUUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crimean Congo hemorrhagic fever virus (CCHFV) is one of the most severe viral zoonozes. It is prevalent throughout Africa, Asia and southern Europe. Limited availability of sequence data has hindered phylogeographic studies. The complete genomic sequence of all three segments of 14 Crimean Congo hemorrhagic fever virus strains isolated from 1958-2000 in Russia, Central Asia and Africa was identified. Each genomic segment was independently subjected to continuous Bayesian phylogeographic analysis. The origin of each genomic segment was traced to Africa about 1,000-5,000 years ago. The virus was first introduced to South and Central Asia in the Middle Ages, and then spread to China, India and Russia. Reverse transfers of genomic segments from Asia to Africa were also observed. The European CCHFV genotype V was introduced to Europe via the Astrakhan region in South Russia 280-400 years ago and subsequently gradually spread westward in Russia, to Turkey and the Balkans less than 150 years ago. Only a few recombination events could be suggested in S and L genomic segments, while segment reassortment was very common. The median height of a non-reassortant phylogenetic tree node was 68-156 years. There were reassortment events within the European CCHFV lineage, but not with viruses from other locations. Therefore, CCHFV in Europe is a recently emerged zoonosis that represents a spillover from the global gene pool.

Indexed as

AfricaAsiaBayes TheoremEuropeGenome, ViralGenotypeHemorrhagic Fever, CrimeanHemorrhagic Fever Virus, Crimean-CongoHumansPhylogenyPhylogeography

Identifiers

PMID27880794
PMCPMC5120814
OpenAlexW2552270511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.