Evidence map›Paper›PMID 27879846›Full record

ReviewSensors (Basel, Switzerland)2008

Visible Genotype Sensor Array.

Yuichi Michikawa, Tomo Suga, Yoshimi Ohtsuka, Izumi Matsumoto, Atsuko Ishikawa, Kenichi Ishikawa, Mayumi Iwakawa, Takashi Imai

Open access · goldAbstract readReview
In one paragraph

Review in Sensors (Basel, Switzerland), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Amperometric Sensor for Detection of Chloride Ions.Sensors (Basel, Switzerland) · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yuichi MichikawaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. y_michi@nirs.go.jp.
Tomo SugaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. tomo@nirs.go.jp.
Yoshimi OhtsukaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. y_otsuka@nirs.go.jp.
Izumi MatsumotoRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. spring@nirs.go.jp.
Atsuko IshikawaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. a_ishi@nirs.go.jp.
Kenichi IshikawaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. k_ishi@nirs.go.jp.
Mayumi IwakawaRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. mayumii@nirs.go.jp.
Takashi ImaiRadGenomics Project, Research Center for Charged Particle Therapy, National Institute of Radiological Sciences, Chiba, 263-8555, Japan. imait@nirs.go.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A visible sensor array system for simultaneous multiple SNP genotyping has been developed using a new plastic base with specific surface chemistry. Discrimination of SNP alleles is carried out by an allele-specific extension reaction using immobilized oligonucleotide primers. The 3'-ends of oligonucleotide primers are modified with a locked nucleic acid to enhance their efficiency in allelic discrimination. Biotin-dUTPs included in the reaction mixture are selectively incorporated into extending primer sequences and are utilized as tags for alkaline phosphatase-mediated precipitation of colored chemical substrates onto the surface of the plastic base. The visible precipitates allow immediate inspection of typing results by the naked eye and easy recording by a digital camera equipped on a commercial mobile phone. Up to four individuals can be analyzed on a single sensor array and multiple sensor arrays can be handled in a single operation. All of the reactions can be performed within one hour using conventional laboratory instruments. This visible genotype sensor array is suitable for "focused genomics" that follows "comprehensive genomics".

Indexed as

arrayplasticprimer extension.SNPVisible sensor

Identifiers

PMID27879846
PMCPMC3673442
OpenAlexW2157455890

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.