Evidence map›Paper›PMID 27879316›Full record

ArticleThe Journal of biological chemistry2017

Structure-based Design of Cyclically Permuted HIV-1 gp120 Trimers That Elicit Neutralizing Antibodies.

Sannula Kesavardhana, Raksha Das, Michael Citron, Rohini Datta, Linda Ecto, Nonavinakere Seetharam Srilatha, Daniel DiStefano, Ryan Swoyer, Joseph G Joyce, Somnath Dutta and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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  5. A facile method of mapping HIV-1 neutralizing epitopes using chemically masked cysteines and deep sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Sannula KesavardhanaFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Raksha DasFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Michael CitronMerck & Company, Inc., West Point, Pennsylvania 19486, and.
Rohini DattaFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Linda EctoMerck & Company, Inc., West Point, Pennsylvania 19486, and.
Nonavinakere Seetharam SrilathaFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Daniel DiStefanoMerck & Company, Inc., West Point, Pennsylvania 19486, and.
Ryan SwoyerMerck & Company, Inc., West Point, Pennsylvania 19486, and.
Joseph G JoyceMerck & Company, Inc., West Point, Pennsylvania 19486, and.
Somnath DuttaFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Celia C LaBranchethe Department of Surgery, Duke University, Durham, North Carolina 27705.
David C Montefiorithe Department of Surgery, Duke University, Durham, North Carolina 27705.
Jessica A FlynnMerck & Company, Inc., West Point, Pennsylvania 19486, and jessica_flynn@merck.com.
Raghavan VaradarajanFrom the Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India, varadar@mbu.iisc.ernet.in.
Indian Institute of Science Bangalore · INUnited States Military Academy · USDuke University · US

Funding

HIV-1 envelope structure, stability and dynamics probed by saturation mutagenesisR01AI118366 · NIAID · INDIAN INSTITUTE OF SCIENCE · PI VARADARAJAN, RAGHAVAN · 2015 to 2019
$607k
NIAID NIH HHS R01 AI118366
6 · The paper itself

Abstract

A major goal for HIV-1 vaccine development is an ability to elicit strong and durable broadly neutralizing antibody (bNAb) responses. The trimeric envelope glycoprotein (Env) spikes on HIV-1 are known to contain multiple epitopes that are susceptible to bNAbs isolated from infected individuals. Nonetheless, all trimeric and monomeric Env immunogens designed to date have failed to elicit such antibodies. We report the structure-guided design of HIV-1 cyclically permuted gp120 that forms homogeneous, stable trimers, and displays enhanced binding to multiple bNAbs, including VRC01, VRC03, VRC-PG04, PGT128, and the quaternary epitope-specific bNAbs PGT145 and PGDM1400. Constructs that were cyclically permuted in the V1 loop region and contained an N-terminal trimerization domain to stabilize V1V2-mediated quaternary interactions, showed the highest homogeneity and the best antigenic characteristics. In guinea pigs, a DNA prime-protein boost regimen with these new gp120 trimer immunogens elicited potent neutralizing antibody responses against highly sensitive Tier 1A isolates and weaker neutralizing antibody responses with an average titer of about 115 against a panel of heterologous Tier 2 isolates. A modest fraction of the Tier 2 virus neutralizing activity appeared to target the CD4 binding site on gp120. These results suggest that cyclically permuted HIV-1 gp120 trimers represent a viable platform in which further modifications may be made to eventually achieve protective bNAb responses.

Indexed as

Drug DesignAnimalsAntibodies, NeutralizingBinding SitesCrystallography, X-RayEpitopesGuinea PigsHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHumansProtein BindingProtein ConformationProtein MultimerizationAntibodies, NeutralizingEpitopesHIV AntibodiesHIV Envelope Protein gp120CD4 binding sitecyclic permutationEnv trimershuman immunodeficiency virus (HIV)immunogen designimmunogenicityprotein conformationprotein engineeringprotein stabilityprotein stabilization, dynamics

Identifiers

PMID27879316
PMCPMC5217686
OpenAlexW2553805023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.