Evidence map›Paper›PMID 27879205›Full record

ArticleeLife2016

Structure of protein O-mannose kinase reveals a unique active site architecture.

Qinyu Zhu, David Venzke, Ameya S Walimbe, Mary E Anderson, Qiuyu Fu, Lisa N Kinch, Wei Wang, Xing Chen, Nick V Grishin, Niu Huang and 4 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Emerging functions of pseudoenzymes.The Biochemical journal · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Prospects for pharmacological targeting of pseudokinases.Nature reviews. Drug discovery · 2019
    Review
  16. Divergent kinase regulates membrane ultrastructure of theProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Life is sweet: the cell biology of glycoconjugates.Molecular biology of the cell · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Qinyu ZhuThe State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
David VenzkeDepartment of Molecular Physiology and Biophysics, Howard Hughes Medical Institute, University of Iowa Roy J and Lucille A Carver College of Medicine, Iowa City, United States.
Ameya S WalimbeDepartment of Molecular Physiology and Biophysics, Howard Hughes Medical Institute, University of Iowa Roy J and Lucille A Carver College of Medicine, Iowa City, United States.
Mary E AndersonDepartment of Molecular Physiology and Biophysics, Howard Hughes Medical Institute, University of Iowa Roy J and Lucille A Carver College of Medicine, Iowa City, United States.
Qiuyu FuNational Institute of Biological Sciences, Beijing, China.
Lisa N KinchDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, United States.
Wei WangAcademy for Advanced Interdisciplinary Studies, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Xing ChenAcademy for Advanced Interdisciplinary Studies, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Nick V GrishinDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, United States.
Niu HuangNational Institute of Biological Sciences, Beijing, China.
Liping YuMedical Nuclear Magnetic Resonance Facility, University of Iowa Roy J and Lucille A Carver College of Medicine, Iowa, United States.
Jack E DixonDepartment of Pharmacology, University of California, San Diego, La Jolla, United States.
Kevin P CampbellDepartment of Molecular Physiology and Biophysics, Howard Hughes Medical Institute, University of Iowa Roy J and Lucille A Carver College of Medicine, Iowa City, United States.ORCID 0000-0003-2066-5889
Junyu XiaoThe State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.ORCID 0000-0003-1822-1701
University of Iowa · USPeking University · CNNational Institute of Biological Sciences, Beijing · CNThe University of Texas Southwestern Medical Center · USUniversity of California San Diego · US

Funding

Therapeutic Potential of ESC-Derived Myogenic PrecursorsU54NS053672 · NINDS · UNIVERSITY OF IOWA · PI CAMPBELL, KEVIN P. · 2005 to 2019
$22.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
REGULATION OF NEUROPEPTIDE BIOSYNTHESISR01DK018849 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIXON, JACK E, WORBY, CAROLYN ANN · 1986 to 2020
$7.0M
STUDIES ON PANCREATIC HORMONESR37DK018024 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIXON, JACK E · 1988 to 2013
$5.6M
Computational methods for structural-functional studies of proteinsR01GM094575 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GRISHIN, NICK V. · 2010 to 2017
$2.4M
STUDIES ON PANCREATIC HORMONESR01DK018024 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIXON, JACK E, WORBY, CAROLYN ANN · 1986 to 2018
$2.1M
Howard Hughes Medical InstituteNIDDK NIH HHS R01 DK018024NIDDK NIH HHS R01 DK018849NIDDK NIH HHS R37 DK018024NIGMS NIH HHS R01 GM094575NIGMS NIH HHS T32 GM007337NINDS NIH HHS U54 NS053672
6 · The paper itself

Abstract

The 'pseudokinase' SgK196 is a protein O-mannose kinase (POMK) that catalyzes an essential phosphorylation step during biosynthesis of the laminin-binding glycan on α-dystroglycan. However, the catalytic mechanism underlying this activity remains elusive. Here we present the crystal structure of

Indexed as

Adenosine DiphosphateAluminum CompoundsAmino Acid SequenceAnimalsBaculoviridaeCatalytic DomainCloning, MolecularCrystallography, X-RayDystroglycansFish ProteinsFluoridesGene ExpressionHumansMagnesiumMannoseModels, MolecularAdenosine DiphosphateAluminum Compoundsaluminum fluorideDystroglycansFish ProteinsFluoridesMagnesiumMannoseProtein KinasesRecombinant ProteinsTrisaccharidesbiochemistrybiophysicsdystroglycan biosynthesismuscular dystrophynonesecretory pathway kinasestructural biology

Identifiers

PMID27879205
PMCPMC5142810
OpenAlexW2550847151

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.