Evidence map›Paper›PMID 27879040›Full record

ArticleMolecular plant pathology2018

Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defence and resistance.

Diana Leibman, Michael Kravchik, Dalia Wolf, Sabrina Haviv, Mira Weissberg, Ron Ophir, Harry S Paris, Peter Palukaitis, Shou-Wei Ding, Victor Gaba and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genetic Dissection of ToLCNDV Resistance in Resistant Sources ofInternational journal of molecular sciences · 2024
    Article
  5. Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
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  15. Article
  16. Article
  17. Article
  18. Article
  19. Genomic-Assisted Marker Development Suitable forFrontiers in plant science · 2021
    Article
  20. Identification of transcription factor binding sites on promoter ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Diana LeibmanDepartment of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Michael KravchikDepartment of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Dalia WolfDepartment of Vegetable and Field Crops, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Sabrina HavivDepartment of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Mira WeissbergDepartment of Fruit Tree Sciences, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Ron OphirDepartment of Fruit Tree Sciences, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Harry S ParisDepartment of Vegetable Crops and Plant Genetics, Agricultural Research Organization, Newe Ya'ar Research Center, PO Box 1021, Ramat, Yishay, 30-095, Israel.
Peter PalukaitisDepartment of Horticultural Sciences, Seoul Women's University, Nowon-gu, Seoul, 01797, South Korea.
Shou-Wei DingDepartment of Plant Pathology and Microbiology & Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.
Victor GabaDepartment of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Amit Gal-OnDepartment of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Bet Dagan, 50250, Israel.
Agricultural Research Organization · ILSeoul Women's University · KRUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA-dependent RNA polymerase 1 (RDR1) plays a crucial role in plant defence against viruses. In this study, it was observed that cucumber, Cucumis sativus, uniquely encodes a small gene family of four RDR1 genes. The cucumber RDR1 genes (CsRDR1a, CsRDR1b and duplicated CsRDR1c1/c2) shared 55%-60% homology in their encoded amino acid sequences. In healthy cucumber plants, RDR1a and RDR1b transcripts were expressed at higher levels than transcripts of RDR1c1/c2, which were barely detectable. The expression of all four CsRDR1 genes was induced by virus infection, after which the expression level of CsRDR1b increased 10-20-fold in several virus-resistant cucumber cultivars and in a broad virus-resistant transgenic cucumber line expressing a high level of transgene small RNAs, all without alteration in salicylic acid (SA) levels. By comparison, CsRDR1c1/c2 genes were highly induced (25-1300-fold) in susceptible cucumber cultivars infected with RNA or DNA viruses. Inhibition of RDR1c1/c2 expression led to increased virus accumulation. Ectopic application of SA induced the expression of cucumber RDR1a, RDR1b and RDRc1/c2 genes. A constitutive high level of RDR1b gene expression independent of SA was found to be associated with broad virus resistance. These findings show that multiple RDR1 genes are involved in virus resistance in cucumber and are regulated in a coordinated fashion with different expression profiles.

Indexed as

Cucumis sativusGene Expression Regulation, PlantPlant ProteinsPlants, Genetically ModifiedRNA-Dependent RNA PolymeraseSalicylic AcidPlant ProteinsRNA-Dependent RNA PolymeraseSalicylic Acidcucumbergene expressionRDR1silencingvirus resistance

Identifiers

PMID27879040
PMCPMC6637986
OpenAlexW2554667356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.