Evidence map›Paper›PMID 27878624›Full record

ArticleCurrent genetics2017

The CreB deubiquitinating enzyme does not directly target the CreA repressor protein in Aspergillus nidulans.

Md Ashiqul Alam, Niyom Kamlangdee, Joan M Kelly

Abstract read
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In one paragraph

Article in Current genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  4. Genome-wide transcription landscape of citric acid producingFrontiers in bioengineering and biotechnology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Induction and Repression of Hydrolase Genes inFrontiers in microbiology · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Regulation ofmBio · 2018
    Article
  17. Review
  18. Carbon Catabolite Repression in Filamentous Fungi.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Md Ashiqul AlamDepartment of Genetics and Evolution, The University of Adelaide, Adelaide, 5005, Australia.
Niyom KamlangdeeDepartment of Genetics and Evolution, The University of Adelaide, Adelaide, 5005, Australia.
Joan M KellyDepartment of Genetics and Evolution, The University of Adelaide, Adelaide, 5005, Australia. joan.kelly@adelaide.edu.au.
University of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitination/deubiquitination pathways are now recognized as key components of gene regulatory mechanisms in eukaryotes. The major transcriptional repressor for carbon catabolite repression in Aspergillus nidulans is CreA, and mutational analysis led to the suggestion that a regulatory ubiquitination/deubiquitination pathway is involved. A key unanswered question is if and how this pathway, comprising CreB (deubiquitinating enzyme) and HulA (ubiquitin ligase) and other proteins, is involved in the regulatory mechanism. Previously, missense alleles of creA and creB were analysed for genetic interactions, and here we extended this to complete loss-of-function alleles of creA and creB, and compared morphological and biochemical phenotypes, which confirmed genetic interaction between the genes. We investigated whether CreA, or a protein in a complex with it, is a direct target of the CreB deubiquitination enzyme, using co-purifications of CreA and CreB, first using strains that overexpress the proteins and then using strains that express the proteins from their native promoters. The Phos-tag system was used to show that CreA is a phosphorylated protein, but no ubiquitination was detected using anti-ubiquitin antibodies and Western analysis. These findings were confirmed using mass spectrometry, which confirmed that CreA was differentially phosphorylated but not ubiquitinated. Thus, CreA is not a direct target of CreB, and nor are proteins that form part of a stable complex with CreA a target of CreB. These results open up new questions regarding the molecular mechanism of CreA repressing activity, and how the ubiquitination pathway involving CreB interacts with this regulatory network.

Indexed as

Aspergillus nidulansCatabolite RepressionCyclic AMP Response Element-Binding ProteinDeubiquitinating EnzymesFungal ProteinsGene Expression Regulation, FungalMutationPromoter Regions, GeneticRepressor ProteinsUbiquitinationCreA protein, Aspergillus nidulansCyclic AMP Response Element-Binding ProteinDeubiquitinating EnzymesFungal ProteinsRepressor ProteinsAspergillus nidulansCarbon catabolite repressionCreA DNA-binding proteinCreB deubiquitinating enzymeRegulatory deubiquitinationTranscriptional repression

Identifiers

PMID27878624
OpenAlexW2509486234

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.