Evidence map›Paper›PMID 27875995›Full record

ArticleBMC genomics2016

High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays.

Marie-Cécile Dufour, Noël Magnin, Bernard Dumas, Sophie Vergnes, Marie-France Corio-Costet

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Deciphering Plant-Induced Responses towardJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Impact ofInternational journal of molecular sciences · 2019
    Article
  12. Article
  13. Article
  14. Pathogenicity Traits Correlate With the SusceptibleFrontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Marie-Cécile DufourINRA, UMR Santé et Agroécologie du vignoble (SAVE-1065), CS 20032, ISVV, 33882, Villenave d'Ornon, CEDEX, France. dufour@bordeaux.inra.fr.
Noël MagninINRA, UMR Santé et Agroécologie du vignoble (SAVE-1065), CS 20032, ISVV, 33882, Villenave d'Ornon, CEDEX, France.
Bernard DumasUniversité de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, BP 42617, Auzeville, F-31326, Castanet-Tolosan, France.
Sophie VergnesUniversité de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, BP 42617, Auzeville, F-31326, Castanet-Tolosan, France.
Marie-France Corio-CostetINRA, UMR Santé et Agroécologie du vignoble (SAVE-1065), CS 20032, ISVV, 33882, Villenave d'Ornon, CEDEX, France.
Santé et Agroécologie du Vignoble · FRLaboratoire de Recherche en Sciences Végétales · FRUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe fight against grapevine diseases due to biotrophic pathogens usually requires the massive use of chemical fungicides with harmful environmental effects. An alternative strategy could be the use of compounds able to stimulate plant immune responses which significantly limit the development of pathogens in laboratory conditions. However, the efficiency of this strategy in natura is still insufficient to be included in pest management programs. To understand and to improve the mode of action of plant defense stimulators in the field, it is essential to develop reliable tools that describe the resistance status of the plant upon treatment.

resultsWe have developed a pioneering tool ("NeoViGen96" chip) based on a microfluidic dynamic array platform allowing the expression profiling of 85 defense-related grapevine genes in 90 cDNA preparations in a 4 h single run. Two defense inducers, benzothiadiazole (BTH) and fosetyl-aluminum (FOS), have been tested in natura using the "NeoViGen96" chip as well as their efficacy against downy mildew. BTH-induced grapevine resistance is accompanied by the induction of PR protein genes (PR1, PR2 and PR3), genes coding key enzymes in the phenylpropanoid pathway (PAL and STS), a GST gene coding an enzyme involved in the redox status and an ACC gene involved in the ethylene pathway. FOS, a phosphonate known to possess a toxic activity against pathogens and an inducing effect on defense genes provided a better grapevine protection than BTH. Its mode of action was probably strictly due to its fungicide effect at high concentrations because treatment did not induce significant change in the expression level of selected defense-related genes.

conclusionsThe NeoViGen96" chip assesses the effectiveness of plant defense inducers on grapevine in vineyard with an excellent reproducibility. A single run with this system (4 h and 1,500 €), corresponds to 180 qPCR plates with conventional Q-PCR assays (Stragene system, 270 h and 9,000 €) thus a throughput 60-70 times higher and 6 times cheaper. Grapevine responses after BTH elicitation in the vineyard were similar to those obtained in laboratory conditions, whereas our results suggest that the protective effect of FOS against downy mildew in the vineyard was only due to its fungicide activity since no activity on plant defense genes was observed. This tool provides better understanding of how the grapevine replies to elicitation in its natural environment and how the elicitor potential can be used to reduce chemical fungicide inputs.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGenes, PlantLab-On-A-Chip DevicesDisease ResistanceHigh-Throughput Nucleotide SequencingPhenotypePlant DiseasesPlant LeavesThiadiazolesTranscriptomeVitisbenzo-1,2,3-thiadiazoleThiadiazolesBTHDefense responsesDynamic arrayElicitationFosetylGene expressionGrapevinePlasmopara viticolaReal-time qPCRVineyard experiments

Identifiers

PMID27875995
PMCPMC5120521
OpenAlexW2552640504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.