ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017
Graphical genotyping as a method to map Ny
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 41 citations in OpenAlex.
- The potato cyst nematode Globodera pallida overcomes major potato resistance through selection on standing variation at a single locus.The New phytologist · 2026Article
- Tracing modern breeding introgressions in European potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Role of RyScientific reports · 2025Article
- Getting help from the extended family: identification and genetic characterisation of novel resistance toMolecular breeding : new strategies in plant improvement · 2025Article
- Identification by GWAS of marker haplotypes relevant to breed potato for Globodera pallida resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genetic markers identify duplicates in Nordic potato collections.Frontiers in plant science · 2024Article
- SMRT-AgRenSeq-d in potato (Horticulture research · 2023Article
- Resisting Potato Cyst Nematodes With Resistance.Frontiers in plant science · 2021Review
- Distribution of P1(D1) wart disease resistance in potato germplasm and GWAS identification of haplotype-specific SNP markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Transcriptome Comparison of Defense Responses in the Rice Variety 'Jao Hom Nin' Regarding Two Blast Resistant Genes,Plants (Basel, Switzerland) · 2020Article
- Article
- Natural resistance to Potato virus Y in Solanum tuberosum Group Phureja.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Extreme resistance to Potato virus Y in potato carrying the RyPlant biotechnology journal · 2020Article
- Mapping and DNA sequence characterisation of the Rysto locus conferring extreme virus resistance to potato cultivar 'White Lady'.PloS one · 2020Article
- Molecular Characterization of 87 Functional Genes in Wheat Diversity Panel and Their Association With Phenotypes Under Well-Watered and Water-Limited Conditions.Frontiers in plant science · 2019Article
- Linkage Disequilibrium and Evaluation of Genome-Wide Association Mapping Models in Tetraploid Potato.G3 (Bethesda, Md.) · 2018Article
- Molecular and genetic characterization of the RyTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Durum Wheat Landraces from East and West Regions of the Mediterranean Basin Are Genetically Distinct for Yield Components and Phenology.Frontiers in plant science · 2018Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageThe method of graphical genotyping is applied to a panel of tetraploid potato cultivars to visualize haplotype sharing. The method allowed to map genes involved in virus and nematode resistance. The physical coordinates of the amount of linkage drag surrounding these genes are easily interpretable. Graphical genotyping is a visually attractive and easily interpretable method to represent genetic marker data. In this paper, the method is extended from diploids to a panel of tetraploid potato cultivars. Application of filters to select a subset of SNPs allows one to visualize haplotype sharing between individuals that also share a specific locus. The method is illustrated with cultivars resistant to Potato virus Y (PVY), while simultaneously selecting for the absence of the SNPs in susceptible clones. SNP data will then merge into an image which displays the coordinates of a distal genomic region on the northern arm of chromosome 11 where a specific haplotype is introgressed from the wild potato species S. stoloniferum (CPC 2093) carrying a gene (Ny
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.