Evidence map›Paper›PMID 27872254›Full record

ArticleThe Journal of cell biology2016

A family of membrane-shaping proteins at ER subdomains regulates pre-peroxisomal vesicle biogenesis.

Amit S Joshi, Xiaofang Huang, Vineet Choudhary, Tim P Levine, Junjie Hu, William A Prinz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. The evolving landscape of ER-LD contact sites.Frontiers in cell and developmental biology · 2024
    Review
  14. Concept of lipid droplet biogenesis.European journal of cell biology · 2023
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Regulation of organelle size and organization during development.Seminars in cell & developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Amit S JoshiLaboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.
Xiaofang HuangDepartment of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China.
Vineet ChoudharyLaboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.
Tim P LevineUniversity College London Institute of Ophthalmology, London EC1V 9EL, England, UK.
Junjie HuDepartment of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China.ORCID http://orcid.org/0000-0003-4712-2243
William A PrinzLaboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892 prinzw@helix.nih.gov.ORCID http://orcid.org/0000-0002-9053-2398
National Institutes of Health · USChinese Academy of Sciences · CNNankai University · CNUniversity College London · GB

Funding

Biogenesis of the endoplasmic reticulumZIADK060105 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI PRINZ, WILLIAM · 2009 to 2022
$8.5M
Biotechnology and Biological Sciences Research Council BB/M011801/1
6 · The paper itself

Abstract

Saccharomyces cerevisiae contains three conserved reticulon and reticulon-like proteins that help maintain ER structure by stabilizing high membrane curvature in ER tubules and the edges of ER sheets. A mutant lacking all three proteins has dramatically altered ER morphology. We found that ER shape is restored in this mutant when Pex30p or its homologue Pex31p is overexpressed. Pex30p can tubulate membranes both in cells and when reconstituted into proteoliposomes, indicating that Pex30p is a novel ER-shaping protein. In contrast to the reticulons, Pex30p is low abundance, and we found that it localizes to subdomains in the ER. We show that these ER subdomains are the sites where most preperoxisomal vesicles (PPVs) are generated. In addition, overproduction or deletion of Pex30p or Pex31p alters the size, shape, and number of PPVs. Our findings suggest that Pex30p and Pex31p help shape and generate regions of the ER where PPV biogenesis occurs.

Indexed as

Organelle BiogenesisEndoplasmic ReticulumGreen Fluorescent ProteinsMembrane ProteinsModels, BiologicalMutationPeroxisomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTransport VesiclesGreen Fluorescent ProteinsMembrane ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID27872254
PMCPMC5119935
OpenAlexW2553947326

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.