Evidence map›Paper›PMID 27872245›Full record

ArticlePlant physiology2017

The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.

Petra Stamm, Alexander T Topham, Nur Karimah Mukhtar, Matthew D B Jackson, Daniel F A Tomé, Jim L Beynon, George W Bassel

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  13. Overexpression of MaizeFrontiers in plant science · 2020
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  16. Multiple Links between HD-Zip Proteins and Hormone Networks.International journal of molecular sciences · 2018
    Review
  17. Article
  18. Temperature variability is integrated by a spatially embedded decision-making center to break dormancy inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Petra StammSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.
Alexander T TophamSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.ORCID 0000-0002-1175-3556
Nur Karimah MukhtarSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.
Matthew D B JacksonSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.ORCID 0000-0003-0225-8235
Daniel F A ToméSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.
Jim L BeynonSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and.ORCID 0000-0002-1855-3215
George W BasselSchool of Biosciences, College of Life and Environmental and Life Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom (P.S., A.T.T., N.K.M., M.D.B.J., G.W.B); and g.w.bassel@bham.ac.uk.ORCID 0000-0002-3434-4499
University of Warwick · GBUniversity of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G015066/1Biotechnology and Biological Sciences Research Council BB/J017604/1Biotechnology and Biological Sciences Research Council BB/L010232/1Biotechnology and Biological Sciences Research Council BB/M01116X/1Biotechnology and Biological Sciences Research Council BB/N009754/1
6 · The paper itself

Abstract

Gibberellic acid (GA)-mediated cell expansion initiates the seed-to-seedling transition in plants and is repressed by DELLA proteins. Using digital single-cell analysis, we identified a cellular subdomain within the midhypocotyl, whose expansion drives the final step of this developmental transition under optimal conditions. Using network inference, the transcription factor ATHB5 was identified as a genetic factor whose localized expression promotes GA-mediated expansion specifically within these cells. Both this protein and its putative growth-promoting target EXPANSIN3 are repressed by DELLA, and coregulated at single-cell resolution during seed germination. The cellular domains of hormone sensitivity were explored within the Arabidopsis (Arabidopsis thaliana) embryo by putting seeds under GA-limiting conditions and quantifying cellular growth responses. The middle and upper hypocotyl have a greater requirement for GA to promote cell expansion than the lower embryo axis. Under these conditions, germination was still completed following enhanced growth within the radicle and lower axis. Under GA-limiting conditions, the athb5 mutant did not show a phenotype at the level of seed germination, but it did at a cellular level with reduced cell expansion in the hypocotyl relative to the wild type. These data reveal that the spatiotemporal cell expansion events driving this transition are not determinate, and the conditional use of GA-ATHB5-mediated hypocotyl growth under optimal conditions may be used to optionally support rapid seedling growth. This study demonstrates that multiple genetic and spatiotemporal cell expansion mechanisms underlie the seed to seedling transition in Arabidopsis.

Indexed as

AnisotropyArabidopsis ProteinsGene Expression Regulation, PlantGerminationGibberellinsHomeodomain ProteinsHypocotylPlants, Genetically ModifiedSeedlingsSeedsSingle-Cell AnalysisTranscription FactorsArabidopsis ProteinsATHB5 protein, ArabidopsisEXPANSIN A7 protein, Arabidopsisgibberellic acidGibberellinsHomeodomain ProteinsTranscription Factors

Identifiers

PMID27872245
PMCPMC5210717
OpenAlexW2553087082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.