Evidence map›Paper›PMID 27871244›Full record

ArticleBMC genomics2016

Identification of genes for engineering the male germline of Aedes aegypti and Ceratitis capitata.

Elizabeth R Sutton, Yachuan Yu, Sebastian M Shimeld, Helen White-Cooper, And Luke Alphey

Abstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elizabeth R SuttonDepartment of Zoology, University of Oxford, Oxford, OX1 3PS, UK.
Yachuan YuSchool of Biosciences, Cardiff University, Cardiff, CF10 3AX, UK.
Sebastian M ShimeldDepartment of Zoology, University of Oxford, Oxford, OX1 3PS, UK.
Helen White-CooperSchool of Biosciences, Cardiff University, Cardiff, CF10 3AX, UK. white-cooperh@cardiff.ac.uk.
And Luke AlpheyDepartment of Zoology, University of Oxford, Oxford, OX1 3PS, UK. luke.alphey@pirbright.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/H016473/1Biotechnology and Biological Sciences Research Council BB/J012696/1Biotechnology and Biological Sciences Research Council BB/L004445/1Biotechnology and Biological Sciences Research Council BBS/E/I/00001892
6 · The paper itself

Abstract

backgroundSynthetic biology approaches are promising new strategies for control of pest insects that transmit disease and cause agricultural damage. These strategies require characterised modular components that can direct appropriate expression of effector sequences, with components conserved across species being particularly useful. The goal of this study was to identify genes from which new potential components could be derived for manipulation of the male germline in two major pest species, the mosquito Aedes aegypti and the tephritid fruit fly Ceratitis capitata.

resultsUsing RNA-seq data from staged testis samples, we identified several candidate genes with testis-specific expression and suitable expression timing for use of their regulatory regions in synthetic control constructs. We also developed a novel computational pipeline to identify candidate genes with testis-specific splicing from this data; use of alternative splicing is another method for restricting expression in synthetic systems. Some of the genes identified display testis-specific expression or splicing that is conserved across species; these are particularly promising candidates for construct development.

conclusionsIn this study we have identified a set of genes with testis-specific expression or splicing. In addition to their interest from a basic biology perspective, these findings provide a basis from which to develop synthetic systems to control important pest insects via manipulation of the male germline.

Indexed as

Genes, InsectGenetic EngineeringAedesAnimalsCeratitis capitataFemaleGene Expression RegulationGerm CellsMaleOrgan SpecificityRNA SplicingSequence Analysis, RNASynthetic BiologyTestisAedes aegyptiCeratitis capitataMale germlinePest insectRNA-seqSynthetic biology

Identifiers

PMID27871244
PMCPMC5117610

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.