ArticleNature methods2017
TACO produces robust multisample transcriptome assemblies from RNA-seq.
Article in Nature methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.
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132 citing papers in PubMed.
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- Reference-guided genome assembly of long non-coding rna transcripts reveals target genes associated with Crohn's disease.Scientific reports · 2026Article
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- Multi-omics integration identifies diverse transcripts and chromatin accessibility profiles in Monopterus albus gonads.Scientific data · 2025Article
- Telomere-to-telomere genome assembly of the Dipteran Bactrocera dorsalis from a single individual.Nature communications · 2025Article
- The complete telomere-to-telomere genome assembly of Lablab purpureus (L.) Sweet.Scientific data · 2025Article
- Reference-guided Genome Assembly of Long Non-coding RNA Transcripts Reveals Target Genes Associated With Crohn's Disease.bioRxiv : the preprint server for biology · 2025Article
- A comprehensive analysis of Atlantic salmon gonad and pituitary transcriptomes identifies novel players in sexual maturation.BMC genomics · 2025Article
- Screening a new European hake (Merluccius merluccius) chromosome-level genome assembly suggests an XX/XY sex-determining system driven by the SRY-box transcription factor 3 (sox3).G3 (Bethesda, Md.) · 2025Article
- A chromosome-level genome assembly of Coffea arabica L. var. 'Kona Typica'.Scientific data · 2025Article
- A single-cell atlas of the bobtail squid visual and nervous system highlights molecular principles of convergent evolution.Nature ecology & evolution · 2025Article
- Transcriptome assembly at single-cell resolution with Beaver.Bioinformatics (Oxford, England) · 2025Article
72 more citing papers are in PubMed but not listed here.
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5 authors.
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Abstract
Accurate transcript structure and abundance inference from RNA sequencing (RNA-seq) data is foundational for molecular discovery. Here we present TACO, a computational method to reconstruct a consensus transcriptome from multiple RNA-seq data sets. TACO employs novel change-point detection to demarcate transcript start and end sites, leading to improved reconstruction accuracy compared with other tools in its class. The tool is available at http://tacorna.github.io and can be readily incorporated into RNA-seq analysis workflows.
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